roadrunner
2.6.0
Fast simulator for SBML models
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This is the complete list of members for rr::CompiledExecutableModel, including all inherited members.
applyEventAssignment(int eventId, double *values) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
applyEvents(double timeEnd, const unsigned char *previousEventStatus, const double *initialState, double *finalState) | rr::CompiledExecutableModel | virtual |
applyPendingEvents(double timeEnd) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
cAssignRates_a (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
cAssignRates_b (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
ccomputeAllRatesOfChange (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
ccomputeConservedTotals (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
ccomputeEventPriorities (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
cComputeReactionRates (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
ccomputeRules (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
cconvertToAmounts (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
cconvertToConcentrations (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
cevalEvents (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
cevalInitialAssignments (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
cevalModel (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
cgetConcentration (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
cGetCurrentValues (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
cgetModelName (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
cgetNumLocalParameters (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
cinitializeInitialConditions (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
cInitializeRateRuleSymbols (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
cInitializeRates (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
cInitModel (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
cInitModelData (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
CompiledExecutableModel(const ModelSymbols &symbols, ModelSharedLibrary *dll) | rr::CompiledExecutableModel | |
CompiledModelState (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | friend |
computeAllRatesOfChange() (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
computeConservedTotals() (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
computeEventPriorites() (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
computeRules() (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
convertToAmounts() (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
convertToConcentrations() (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
cresetEvents (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
csetBoundaryConditions (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
csetCompartmentVolumes (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
csetConcentration (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
csetInitialConditions (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
csetParameterValues (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
ctestConstraints (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
cupdateDependentSpeciesValues (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
evalEventAssignment(int eventId) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
evalEvents(const double time, const double *y) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
evalInitialAssignments() (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
evalInitialConditions() (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
evalReactionRates() (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
eventAssignment(int eventId) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
ExecutableModel() | rr::ExecutableModel | |
ExecutableModelFlags enum name | rr::ExecutableModel | |
getAmount(const int i) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
getAssignmentRuleIds(std::list< std::string > &)=0 (defined in rr::ExecutableModel) | rr::ExecutableModel | pure virtual |
getBoundarySpeciesAmounts(int len, int const *indx, double *values) | rr::CompiledExecutableModel | virtual |
rr::ExecutableModel::getBoundarySpeciesAmounts(size_t len, int const *indx, double *values)=0 | rr::ExecutableModel | pure virtual |
getBoundarySpeciesCompartmentIndex(int index) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
getBoundarySpeciesConcentrations(int len, int const *indx, double *values) | rr::CompiledExecutableModel | virtual |
rr::ExecutableModel::getBoundarySpeciesConcentrations(size_t len, int const *indx, double *values)=0 | rr::ExecutableModel | pure virtual |
getBoundarySpeciesId(int index) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
getBoundarySpeciesId(size_t index)=0 (defined in rr::ExecutableModel) | rr::ExecutableModel | pure virtual |
getBoundarySpeciesIndex(const std::string &name) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
getBoundarySpeciesInitAmounts(size_t len, int const *indx, double *values)=0 | rr::ExecutableModel | pure virtual |
getBoundarySpeciesInitConcentrations(size_t len, int const *indx, double *values)=0 | rr::ExecutableModel | pure virtual |
getCompartmentId(int index) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
getCompartmentId(size_t index)=0 (defined in rr::ExecutableModel) | rr::ExecutableModel | pure virtual |
getCompartmentIndex(const std::string &name) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
getCompartmentIndexForBoundarySpecies(size_t index)=0 (defined in rr::ExecutableModel) | rr::ExecutableModel | pure virtual |
getCompartmentIndexForFloatingSpecies(size_t index)=0 (defined in rr::ExecutableModel) | rr::ExecutableModel | pure virtual |
getCompartmentInitVolumes(int len, int const *indx, double *values) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
rr::ExecutableModel::getCompartmentInitVolumes(size_t len, int const *indx, double *values)=0 | rr::ExecutableModel | pure virtual |
getCompartmentVolumes(int len, int const *indx, double *values) | rr::CompiledExecutableModel | virtual |
rr::ExecutableModel::getCompartmentVolumes(size_t len, int const *indx, double *values)=0 | rr::ExecutableModel | pure virtual |
getConservedMoietyId(int index) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
getConservedMoietyId(size_t index)=0 (defined in rr::ExecutableModel) | rr::ExecutableModel | pure virtual |
getConservedMoietyIndex(const std::string &name) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
getConservedMoietyValues(int len, int const *indx, double *values) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
getConservedMoietyValues(size_t len, int const *indx, double *values)=0 (defined in rr::ExecutableModel) | rr::ExecutableModel | pure virtual |
getConservedSumChanged() (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
getEventDelays(int len, int const *indx, double *values) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
getEventId(int) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
getEventId(size_t index)=0 (defined in rr::ExecutableModel) | rr::ExecutableModel | pure virtual |
getEventIds(std::list< std::string > &)=0 (defined in rr::ExecutableModel) | rr::ExecutableModel | pure virtual |
getEventIndex(const std::string &) | rr::CompiledExecutableModel | virtual |
getEventListener(int) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
getEventListener(size_t index)=0 (defined in rr::ExecutableModel) | rr::ExecutableModel | pure virtual |
getEventPriorities(int len, int const *indx, double *values) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
getEventRoots(double time, const double *y, double *gdot) | rr::CompiledExecutableModel | virtual |
getEventTriggers(int len, const int *indx, unsigned char *values) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
rr::ExecutableModel::getEventTriggers(size_t len, const int *indx, unsigned char *values)=0 | rr::ExecutableModel | pure virtual |
getExecutableModelDesc() const | rr::CompiledExecutableModel | inlinevirtual |
getFlags() const | rr::CompiledExecutableModel | inlinevirtual |
getFloatingSpeciesAmountRate(int index, const double *reactionRates) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
rr::ExecutableModel::getFloatingSpeciesAmountRate(size_t index, const double *reactionRates)=0 | rr::ExecutableModel | pure virtual |
getFloatingSpeciesAmountRates(int len, int const *indx, double *values) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
rr::ExecutableModel::getFloatingSpeciesAmountRates(size_t len, int const *indx, double *values)=0 | rr::ExecutableModel | pure virtual |
getFloatingSpeciesAmounts(int len, int const *indx, double *values) | rr::CompiledExecutableModel | virtual |
rr::ExecutableModel::getFloatingSpeciesAmounts(size_t len, int const *indx, double *values)=0 | rr::ExecutableModel | pure virtual |
getFloatingSpeciesConcentration(int index) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
getFloatingSpeciesConcentrationRates(int len, int const *indx, double *values) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
rr::ExecutableModel::getFloatingSpeciesConcentrationRates(size_t len, int const *indx, double *values)=0 | rr::ExecutableModel | pure virtual |
getFloatingSpeciesConcentrations(int len, int const *indx, double *values) | rr::CompiledExecutableModel | virtual |
rr::ExecutableModel::getFloatingSpeciesConcentrations(size_t len, int const *indx, double *values)=0 | rr::ExecutableModel | pure virtual |
getFloatingSpeciesId(int index) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
getFloatingSpeciesId(size_t index)=0 (defined in rr::ExecutableModel) | rr::ExecutableModel | pure virtual |
getFloatingSpeciesIndex(const std::string &name) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
getFloatingSpeciesInitAmounts(int len, int const *indx, double *values) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
rr::ExecutableModel::getFloatingSpeciesInitAmounts(size_t len, int const *indx, double *values)=0 | rr::ExecutableModel | pure virtual |
getFloatingSpeciesInitConcentrations(int len, int const *indx, double *values) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
rr::ExecutableModel::getFloatingSpeciesInitConcentrations(size_t len, int const *indx, double *values)=0 | rr::ExecutableModel | pure virtual |
getGlobalParameterId(int index) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
rr::ExecutableModel::getGlobalParameterId(size_t index)=0 | rr::ExecutableModel | pure virtual |
getGlobalParameterIndex(const std::string &name) | rr::CompiledExecutableModel | virtual |
getGlobalParameterInitValues(size_t len, int const *indx, double *values)=0 | rr::ExecutableModel | pure virtual |
getGlobalParameterValues(int len, int const *indx, double *values) | rr::CompiledExecutableModel | virtual |
rr::ExecutableModel::getGlobalParameterValues(size_t len, int const *indx, double *values)=0 | rr::ExecutableModel | pure virtual |
getIds(int types, std::list< std::string > &ids) | rr::CompiledExecutableModel | virtual |
getInfo() (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
getInitialAssignmentIds(std::list< std::string > &)=0 (defined in rr::ExecutableModel) | rr::ExecutableModel | pure virtual |
getModelName() | rr::CompiledExecutableModel | virtual |
getNextPendingEventTime(bool pop) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
getNumBoundarySpecies() | rr::CompiledExecutableModel | virtual |
getNumCompartments() (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
getNumConservedMoieties() (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
getNumDepFloatingSpecies() | rr::CompiledExecutableModel | virtual |
getNumEvents() (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
getNumFloatingSpecies() | rr::CompiledExecutableModel | virtual |
getNumGlobalParameters() | rr::CompiledExecutableModel | virtual |
getNumIndFloatingSpecies() | rr::CompiledExecutableModel | virtual |
getNumLocalParameters(int reactionId) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
getNumPiecewiseTriggers()=0 | rr::ExecutableModel | pure virtual |
getNumRateRules() (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
getNumReactions() | rr::CompiledExecutableModel | virtual |
getPendingEventSize() (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
getPiecewiseTriggerRoots(double time, const double *y, double *gdot)=0 (defined in rr::ExecutableModel) | rr::ExecutableModel | pure virtual |
getRandom() | rr::CompiledExecutableModel | virtual |
getRandomSeed() | rr::CompiledExecutableModel | virtual |
getRateRuleIds(std::list< std::string > &)=0 (defined in rr::ExecutableModel) | rr::ExecutableModel | pure virtual |
getRateRuleRates(size_t len, int const *indx, double *values) | rr::ExecutableModel | virtual |
getRateRuleSymbols() const =0 | rr::ExecutableModel | pure virtual |
getRateRuleValues(double *rateRuleValues) | rr::CompiledExecutableModel | virtual |
getReactionId(int index) | rr::CompiledExecutableModel | virtual |
rr::ExecutableModel::getReactionId(size_t index)=0 | rr::ExecutableModel | pure virtual |
getReactionIndex(const std::string &reactionName) | rr::CompiledExecutableModel | virtual |
getReactionRates(int len, const int *indx, double *values) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
rr::ExecutableModel::getReactionRates(size_t len, int const *indx, double *values)=0 | rr::ExecutableModel | pure virtual |
getStateVector(double *stateVector) | rr::CompiledExecutableModel | virtual |
getStateVectorId(int index) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
rr::ExecutableModel::getStateVectorId(size_t index)=0 | rr::ExecutableModel | pure virtual |
getStateVectorRate(double time, const double *y, double *dydt=0) | rr::CompiledExecutableModel | virtual |
getStoichiometry(int speciesIndex, int reactionIndex) | rr::CompiledExecutableModel | virtual |
rr::ExecutableModel::getStoichiometry(int index)=0 | rr::ExecutableModel | pure virtual |
getStoichiometryId(size_t index)=0 | rr::ExecutableModel | pure virtual |
getStoichiometryIndex(const std::string &)=0 | rr::ExecutableModel | pure virtual |
getStoichiometryIndex(const std::string &, const std::string &)=0 | rr::ExecutableModel | pure virtual |
getStoichiometryMatrix(int *rows, int *cols, double **data) | rr::CompiledExecutableModel | virtual |
getSupportedIdTypes() | rr::CompiledExecutableModel | virtual |
getTime() (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
getValue(const std::string &id) | rr::CompiledExecutableModel | virtual |
initializeInitialConditions() (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
initializeRateRuleSymbols() (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
initializeRates() (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
INTEGRATION enum value | rr::ExecutableModel | |
mAssignments (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
mAssignmentTimes (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
mConservedSumChanged (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
mData | rr::CompiledExecutableModel | |
mDLL (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
mDummyDouble (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
mDummyDoubleArray (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
mDummyInt (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
mIntegrationStartTime (defined in rr::ExecutableModel) | rr::ExecutableModel | protected |
mIsInitialized | rr::CompiledExecutableModel | |
modelStates (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
ms (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
OPTIMIZE_REACTION_RATE_SELECTION enum value | rr::ExecutableModel | |
PopDiscard enum value | rr::CompiledExecutableModel | |
popState(unsigned options=0) | rr::CompiledExecutableModel | virtual |
print(std::ostream &stream) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
pushState(unsigned options=0) | rr::CompiledExecutableModel | virtual |
removePendingAssignmentForIndex(int eventIndex) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
reset() | rr::CompiledExecutableModel | virtual |
reset(int options) | rr::CompiledExecutableModel | virtual |
resetEvents() (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
retestEvents(const double &timeEnd, const std::vector< int > &handledEvents, std::vector< int > &removeEvents) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
retestEvents(const double &timeEnd, std::vector< int > &handledEvents, const bool &assignOldState) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
retestEvents(const double &timeEnd, const std::vector< int > &handledEvents, const bool &assignOldState, std::vector< int > &removeEvents) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
saveState(std::ostream &out) (defined in rr::ExecutableModel) | rr::ExecutableModel | inlinevirtual |
setBoundaryConditions() (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
setBoundarySpeciesAmounts(size_t len, int const *indx, double const *values)=0 (defined in rr::ExecutableModel) | rr::ExecutableModel | pure virtual |
setBoundarySpeciesAmounts(size_t len, int const *indx, double const *values, bool strict)=0 (defined in rr::ExecutableModel) | rr::ExecutableModel | pure virtual |
setBoundarySpeciesConcentrations(int len, int const *indx, double const *values) | rr::CompiledExecutableModel | virtual |
rr::ExecutableModel::setBoundarySpeciesConcentrations(size_t len, int const *indx, double const *values)=0 | rr::ExecutableModel | pure virtual |
setBoundarySpeciesInitAmounts(size_t len, int const *indx, double const *values)=0 | rr::ExecutableModel | pure virtual |
setBoundarySpeciesInitConcentrations(size_t len, int const *indx, double const *values)=0 | rr::ExecutableModel | pure virtual |
setCompartmentInitVolumes(int len, int const *indx, double const *values) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
rr::ExecutableModel::setCompartmentInitVolumes(size_t len, int const *indx, double const *values)=0 | rr::ExecutableModel | pure virtual |
setCompartmentVolumes() (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
setCompartmentVolumes(int len, int const *indx, const double *values) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
setCompartmentVolumes(size_t len, int const *indx, const double *values)=0 (defined in rr::ExecutableModel) | rr::ExecutableModel | pure virtual |
setCompartmentVolumes(size_t len, int const *indx, const double *values, bool strict)=0 (defined in rr::ExecutableModel) | rr::ExecutableModel | pure virtual |
setConcentration(int index, double value) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
setConservedMoietyValues(int len, int const *indx, const double *values) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
setConservedMoietyValues(size_t len, int const *indx, const double *values)=0 (defined in rr::ExecutableModel) | rr::ExecutableModel | pure virtual |
setConservedSumChanged(bool) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
setEventListener(int, rr::EventListenerPtr) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
setEventListener(size_t index, EventListenerPtr eventHandler)=0 (defined in rr::ExecutableModel) | rr::ExecutableModel | pure virtual |
setFlags(uint32_t) | rr::CompiledExecutableModel | inlinevirtual |
setFloatingSpeciesAmounts(int len, int const *indx, const double *values) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
setFloatingSpeciesAmounts(size_t len, int const *indx, const double *values)=0 (defined in rr::ExecutableModel) | rr::ExecutableModel | pure virtual |
setFloatingSpeciesAmounts(size_t len, int const *indx, const double *values, bool strict)=0 (defined in rr::ExecutableModel) | rr::ExecutableModel | pure virtual |
setFloatingSpeciesConcentrations(int len, int const *indx, double const *values) | rr::CompiledExecutableModel | virtual |
rr::ExecutableModel::setFloatingSpeciesConcentrations(size_t len, int const *indx, double const *values)=0 | rr::ExecutableModel | pure virtual |
setFloatingSpeciesInitAmounts(int len, int const *indx, double const *values) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
rr::ExecutableModel::setFloatingSpeciesInitAmounts(size_t len, int const *indx, double const *values)=0 | rr::ExecutableModel | pure virtual |
setFloatingSpeciesInitConcentrations(int len, int const *indx, double const *values) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
rr::ExecutableModel::setFloatingSpeciesInitConcentrations(size_t len, int const *indx, double const *values)=0 | rr::ExecutableModel | pure virtual |
setGlobalParameterInitValues(size_t len, int const *indx, double const *values)=0 | rr::ExecutableModel | pure virtual |
setGlobalParameterValues(int len, int const *indx, const double *values) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
setGlobalParameterValues(size_t len, int const *indx, const double *values)=0 (defined in rr::ExecutableModel) | rr::ExecutableModel | pure virtual |
setGlobalParameterValues(size_t len, int const *indx, const double *values, bool strict)=0 (defined in rr::ExecutableModel) | rr::ExecutableModel | pure virtual |
setInitialConditions() (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
setIntegration(bool value) | rr::ExecutableModel | inlineprotected |
setIntegrationStartTime(double time) (defined in rr::ExecutableModel) | rr::ExecutableModel | virtual |
setParameterValues() (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
setRandomSeed(int64_t) | rr::CompiledExecutableModel | virtual |
setRateRuleValues(const double *rateRuleValues) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
setStateVector(const double *stateVector) | rr::CompiledExecutableModel | virtual |
setStoichiometries(size_t len, int const *indx, const double *values)=0 (defined in rr::ExecutableModel) | rr::ExecutableModel | pure virtual |
setStoichiometries(size_t len, int const *indx, const double *values, bool strict)=0 (defined in rr::ExecutableModel) | rr::ExecutableModel | pure virtual |
setStoichiometry(int index, double value)=0 (defined in rr::ExecutableModel) | rr::ExecutableModel | pure virtual |
setStoichiometry(int speciesIndex, int reactionIndex, double value)=0 (defined in rr::ExecutableModel) | rr::ExecutableModel | pure virtual |
setTime(double _time) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
setupDLLFunctions() | rr::CompiledExecutableModel | virtual |
setupModelData() | rr::CompiledExecutableModel | |
setValue(const std::string &id, double value) | rr::CompiledExecutableModel | virtual |
sortEventsByPriority(std::vector< Event > &firedEvents) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
sortEventsByPriority(std::vector< int > &firedEvents) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
StateStackOptions enum name | rr::CompiledExecutableModel | |
stoichiometryMatrix (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
testConstraints() (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
updateDependentSpeciesValues() (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
~CompiledExecutableModel() (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
~ExecutableModel() | rr::ExecutableModel | inlinevirtual |