roadrunner
2.6.0
Fast simulator for SBML models
- g -
get() :
rr::Setting
get_if() :
rr::Setting
getAbsoluteToleranceVector() :
rr::CVODEIntegrator
,
rr::Integrator
getAs() :
rr::Setting
getAssigmentRules() :
rrllvm::LLVMModelSymbols
getAssignmentRuleIds() :
rr::RoadRunner
getBoundarySpeciesAmounts() :
rr::CompiledExecutableModel
,
rr::ExecutableModel
,
rrllvm::LLVMExecutableModel
getBoundarySpeciesAmountsNamedArray() :
rr::RoadRunner
getBoundarySpeciesAmountsV() :
rr::RoadRunner
getBoundarySpeciesByIndex() :
rr::RoadRunner
getBoundarySpeciesConcentrationIds() :
rr::RoadRunner
getBoundarySpeciesConcentrations() :
rr::CompiledExecutableModel
,
rr::ExecutableModel
,
rrllvm::LLVMExecutableModel
getBoundarySpeciesConcentrationsNamedArray() :
rr::RoadRunner
getBoundarySpeciesConcentrationsV() :
rr::RoadRunner
getBoundarySpeciesId() :
rrllvm::LLVMModelDataSymbols
getBoundarySpeciesIds() :
rr::RoadRunner
getBoundarySpeciesIndex() :
rrllvm::LLVMModelDataSymbols
getBoundarySpeciesInitAmounts() :
rr::ExecutableModel
,
rrllvm::LLVMExecutableModel
getBoundarySpeciesInitConcentrations() :
rr::ExecutableModel
,
rrllvm::LLVMExecutableModel
getBoundarySpeciesInitIndex() :
rrllvm::LLVMModelDataSymbols
getBuilderNonOwning() :
rrllvm::Jit
getCC() :
rr::RoadRunner
getColNames() :
rr::Matrix3D< IndexType, DataType >
getColoredOutput() :
rr::Logger
getCompartmentByIndex() :
rr::RoadRunner
getCompartmentId() :
rrllvm::LLVMModelDataSymbols
getCompartmentIds() :
rr::RoadRunner
getCompartmentIndexForBoundarySpecies() :
rrllvm::LLVMModelDataSymbols
getCompartmentIndexForFloatingSpecies() :
rrllvm::LLVMModelDataSymbols
getCompartmentInitIndex() :
rrllvm::LLVMModelDataSymbols
getCompartmentInitVolumes() :
rr::ExecutableModel
,
rrllvm::LLVMExecutableModel
getCompartmentVolumes() :
rr::CompiledExecutableModel
,
rr::ExecutableModel
,
rrllvm::LLVMExecutableModel
getCompiledModelFromCache() :
rrllvm::Jit
,
rrllvm::LLJit
getCompiledModuleStream() :
rrllvm::Jit
getCompiler() :
rr::CModelGenerator
,
rr::RoadRunner
getConfigFilePath() :
rr::Config
getConservedMoietyAnalysis() :
rr::RoadRunner
getConservedMoietyGlobalParameterIndex() :
rrllvm::LLVMModelDataSymbols
getConservedMoietyId() :
rrllvm::LLVMModelDataSymbols
getConservedMoietyIndex() :
rrllvm::LLVMModelDataSymbols
getConservedMoietySize() :
rrllvm::LLVMModelDataSymbols
getConservedMoietyValues() :
rr::RoadRunner
getContextNonOwning() :
rrllvm::Jit
getCSRMatrixGetNZDecl() :
rrllvm::ModelDataIRBuilder
getCSRMatrixSetNZDecl() :
rrllvm::ModelDataIRBuilder
getCSRSparseStructType() :
rrllvm::ModelDataIRBuilder
getCurrentLevelAsString() :
rr::Logger
getCurrentSBML() :
rr::RoadRunner
getCurrentTime() :
rr::RoadRunner
getCvodeMemory() :
rr::CVODEIntegrator
getDataLayout() :
rrllvm::Jit
,
rrllvm::LLJit
getDefaultCompiler() :
rr::Compiler
getDefaultTargetMachine() :
rrllvm::Jit
getDefaultTargetTriple() :
rr::CCompiler
,
rr::Compiler
,
rrllvm::LLVMCompiler
getDependentFloatingSpeciesAmountsNamedArray() :
rr::RoadRunner
getDependentFloatingSpeciesAmountsV() :
rr::RoadRunner
getDependentFloatingSpeciesConcentrationsNamedArray() :
rr::RoadRunner
getDependentFloatingSpeciesConcentrationsV() :
rr::RoadRunner
getDependentFloatingSpeciesIds() :
rr::RoadRunner
getDependentRatesOfChange() :
rr::RoadRunner
getDependentRatesOfChangeNamedArray() :
rr::RoadRunner
getDepSpeciesIndexForConservedMoietyId() :
rrllvm::LLVMModelDataSymbols
getDescription() :
rr::BasicNewtonIteration
,
rr::CVODEIntegrator
,
rr::EulerIntegrator
,
rr::FixedPointIteration
,
rr::ForwardSensitivitySolver
,
rr::GillespieIntegrator
,
rr::LinesearchNewtonIteration
,
rr::NewtonIteration
,
rr::Registrable
,
rr::RK45Integrator
,
rr::RK4Integrator
,
rr::Solver
,
rr::SteadyStateSolverDecorator
getDiffStepSize() :
rr::RoadRunner
getDisplayName() :
rr::Solver
getDouble() :
rr::Config
getEE() :
rr::RoadRunner
getEigenValueIds() :
rr::RoadRunner
getEventBufferSize() :
rrllvm::LLVMModelDataSymbols
getEventIndex() :
rr::CompiledExecutableModel
,
rr::ExecutableModel
,
rrllvm::LLVMExecutableModel
getEventRoots() :
rr::CompiledExecutableModel
,
rr::ExecutableModel
,
rrllvm::LLVMExecutableModel
getEventTriggers() :
rr::ExecutableModel
,
rrllvm::LLVMExecutableModel
getExecutableModelDesc() :
rr::CompiledExecutableModel
,
rrllvm::LLVMExecutableModel
getExistingIntegratorNames() :
rr::RoadRunner
getExistingSensitivitySolverNames() :
rr::RoadRunner
getExistingSteadyStateSolverNames() :
rr::RoadRunner
getExtendedVersionInfo() :
rr::RoadRunner
getFieldName() :
rrllvm::LLVMModelDataSymbols
getFileName() :
rr::Logger
getFlags() :
rr::CompiledExecutableModel
,
rr::ExecutableModel
,
rrllvm::LLVMExecutableModel
getFloatingSpeciesAmountRate() :
rr::ExecutableModel
,
rrllvm::LLVMExecutableModel
getFloatingSpeciesAmountRates() :
rr::ExecutableModel
,
rrllvm::LLVMExecutableModel
getFloatingSpeciesAmounts() :
rr::CompiledExecutableModel
,
rr::ExecutableModel
,
rrllvm::LLVMExecutableModel
getFloatingSpeciesAmountsNamedArray() :
rr::RoadRunner
getFloatingSpeciesAmountsV() :
rr::RoadRunner
getFloatingSpeciesByIndex() :
rr::RoadRunner
getFloatingSpeciesConcentrationIds() :
rr::RoadRunner
getFloatingSpeciesConcentrationRates() :
rr::ExecutableModel
,
rrllvm::LLVMExecutableModel
getFloatingSpeciesConcentrations() :
rr::CompiledExecutableModel
,
rr::ExecutableModel
,
rrllvm::LLVMExecutableModel
getFloatingSpeciesConcentrationsNamedArray() :
rr::RoadRunner
getFloatingSpeciesConcentrationsV() :
rr::RoadRunner
getFloatingSpeciesId() :
rrllvm::LLVMModelDataSymbols
getFloatingSpeciesIds() :
rr::RoadRunner
,
rrllvm::LLVMModelDataSymbols
getFloatingSpeciesIndex() :
rrllvm::LLVMModelDataSymbols
getFloatingSpeciesInitAmounts() :
rr::ExecutableModel
,
rrllvm::LLVMExecutableModel
getFloatingSpeciesInitConcentrations() :
rr::ExecutableModel
,
rrllvm::LLVMExecutableModel
getFloatingSpeciesInitialConcentrationIds() :
rr::RoadRunner
getFloatingSpeciesInitialConcentrations() :
rr::RoadRunner
getFloatingSpeciesInitialConditionIds() :
rr::RoadRunner
getFloatingSpeciesInitIndex() :
rrllvm::LLVMModelDataSymbols
getFloatingSpeciesSize() :
rrllvm::LLVMModelDataSymbols
getFluxThreshold() :
rr::RoadRunner
getFormattingPattern() :
rr::Logger
getFullEigenValues() :
rr::RoadRunner
getFullEigenValuesNamedArray() :
rr::RoadRunner
getFullJacobian() :
rr::RoadRunner
getFullStoichiometryMatrix() :
rr::RoadRunner
getGlobalParameterByIndex() :
rr::RoadRunner
getGlobalParameterByName() :
rr::RoadRunner
getGlobalParameterId() :
rr::ExecutableModel
,
rrllvm::LLVMExecutableModel
,
rrllvm::LLVMModelDataSymbols
getGlobalParameterIds() :
rr::RoadRunner
getGlobalParameterIndex() :
rr::CompiledExecutableModel
,
rr::ExecutableModel
,
rrllvm::LLVMExecutableModel
,
rrllvm::LLVMModelDataSymbols
getGlobalParameterInitIndex() :
rrllvm::LLVMModelDataSymbols
getGlobalParameterInitValues() :
rr::ExecutableModel
,
rrllvm::LLVMExecutableModel
getGlobalParameterNames() :
rr::ForwardSensitivitySolver
getGlobalParameterValues() :
rr::CompiledExecutableModel
,
rr::ExecutableModel
,
rr::RoadRunner
,
rrllvm::LLVMExecutableModel
getHasOnlySubstanceUnits() :
rr::RoadRunner
getHeaderCode() :
rr::CModelGenerator
getHint() :
rr::BasicNewtonIteration
,
rr::CVODEIntegrator
,
rr::EulerIntegrator
,
rr::FixedPointIteration
,
rr::ForwardSensitivitySolver
,
rr::GillespieIntegrator
,
rr::LinesearchNewtonIteration
,
rr::NewtonIteration
,
rr::Registrable
,
rr::RK45Integrator
,
rr::RK4Integrator
,
rr::Solver
,
rr::SteadyStateSolverDecorator
getHostCPUName() :
rr::CCompiler
,
rr::Compiler
,
rrllvm::LLVMCompiler
getIds() :
rr::CompiledExecutableModel
,
rr::ExecutableModel
,
rr::RoadRunner
,
rrllvm::LLVMExecutableModel
getIndependentBoundarySpeciesSize() :
rrllvm::LLVMModelDataSymbols
getIndependentCompartmentSize() :
rrllvm::LLVMModelDataSymbols
getIndependentFloatingSpeciesAmountsNamedArray() :
rr::RoadRunner
getIndependentFloatingSpeciesAmountsV() :
rr::RoadRunner
getIndependentFloatingSpeciesConcentrationsNamedArray() :
rr::RoadRunner
getIndependentFloatingSpeciesConcentrationsV() :
rr::RoadRunner
getIndependentFloatingSpeciesIds() :
rr::RoadRunner
getIndependentFloatingSpeciesSize() :
rrllvm::LLVMModelDataSymbols
getIndependentGlobalParameterSize() :
rrllvm::LLVMModelDataSymbols
getIndependentRatesOfChange() :
rr::RoadRunner
getIndependentRatesOfChangeNamedArray() :
rr::RoadRunner
getIndex() :
rr::Matrix3D< IndexType, DataType >
getIndSpeciesIndexForConservedMoietyId() :
rrllvm::LLVMModelDataSymbols
getInfo() :
rr::CompiledModelGenerator
,
rr::RoadRunner
getInitialAssignmentIds() :
rr::RoadRunner
getInitialAssignmentRules() :
rrllvm::LLVMModelSymbols
getInitialValues() :
rrllvm::LLVMModelSymbols
getInstance() :
rr::IntegratorFactory
,
rr::RegistrationFactory
,
rr::SteadyStateSolverFactory
getInstanceCount() :
rr::RoadRunner
getInstanceID() :
rr::RoadRunner
getInt() :
rr::Config
getIntegrationMethod() :
rr::CVODEIntegrator
,
rr::EulerIntegrator
,
rr::GillespieIntegrator
,
rr::RK45Integrator
,
rr::RK4Integrator
getIntegrator() :
rr::RoadRunner
getIntegratorByName() :
rr::RoadRunner
getItem() :
rr::BasicDictionary
,
rr::Dictionary
,
rr::EulerIntegrator
,
rr::LoadSBMLOptions
,
rr::Matrix3D< IndexType, DataType >
getItems() :
rr::RoadRunnerMap
getKeys() :
rr::BasicDictionary
,
rr::Dictionary
,
rr::EulerIntegrator
,
rr::LoadSBMLOptions
,
rr::RoadRunnerMap
getKineticLaw() :
rr::NOMSupport
,
rr::RoadRunner
getKinsolMemory() :
rr::KinsolSteadyStateSolver
getKMatrix() :
rr::RoadRunner
getLeftSingularVectors() :
rr::SVD
getLevel() :
rr::Logger
getListener() :
rr::CVODEIntegrator
,
rr::EulerIntegrator
,
rr::GillespieIntegrator
,
rr::RK45Integrator
,
rr::RK4Integrator
getMatchForSymbol() :
rr::NOMSupport
getMaxTries() :
rrllvm::Random
getModel() :
rr::RoadRunner
,
rr::Solver
getModelId() :
rr::RoadRunner
getModelName() :
rr::CompiledExecutableModel
,
rr::ExecutableModel
,
rr::RoadRunner
,
rrllvm::LLVMExecutableModel
getModelParametersAsMap() :
rr::ForwardSensitivitySolver
getModelParametersAsVector() :
rr::ForwardSensitivitySolver
getModuleAsString() :
rrllvm::Jit
,
rrllvm::LLJit
getModuleNonOwning() :
rrllvm::Jit
getName() :
rr::BasicNewtonIteration
,
rr::CVODEIntegrator
,
rr::EulerIntegrator
,
rr::FixedPointIteration
,
rr::ForwardSensitivitySolver
,
rr::GillespieIntegrator
,
rr::LinesearchNewtonIteration
,
rr::NewtonIteration
,
rr::Registrable
,
rr::RK45Integrator
,
rr::RK4Integrator
,
rr::Solver
,
rr::SteadyStateSolverDecorator
getNextPendingEventTime() :
rrllvm::EventQueue
getNrMatrix() :
rr::RoadRunner
getNthFloatingSpeciesCompartmentName() :
rr::NOMSupport
getNumberOfBoundarySpecies() :
rr::RoadRunner
getNumberOfCompartments() :
rr::RoadRunner
getNumberOfDependentSpecies() :
rr::RoadRunner
getNumberOfFloatingSpecies() :
rr::RoadRunner
getNumberOfGlobalParameters() :
rr::RoadRunner
getNumberOfIndependentSpecies() :
rr::RoadRunner
getNumberOfReactions() :
rr::RoadRunner
getNumBoundarySpecies() :
rr::CompiledExecutableModel
,
rr::ExecutableModel
,
rrllvm::LLVMExecutableModel
getNumDepFloatingSpecies() :
rr::CompiledExecutableModel
,
rr::ExecutableModel
,
rrllvm::LLVMExecutableModel
getNumFloatingSpecies() :
rr::CompiledExecutableModel
,
rr::ExecutableModel
,
rrllvm::LLVMExecutableModel
getNumGlobalParameters() :
rr::CompiledExecutableModel
,
rr::ExecutableModel
,
rrllvm::LLVMExecutableModel
getNumIndFloatingSpecies() :
rr::CompiledExecutableModel
,
rr::ExecutableModel
,
rrllvm::LLVMExecutableModel
getNumParameters() :
rr::NOMSupport
getNumParams() :
rr::Solver
getNumPiecewiseTriggers() :
rr::ExecutableModel
,
rrllvm::LLVMExecutableModel
getNumReactions() :
rr::CompiledExecutableModel
,
rr::ExecutableModel
,
rr::NOMSupport
,
rrllvm::LLVMExecutableModel
getNumThreads() :
rr::RoadRunnerMap
getOptions() :
rr::RoadRunner
getParamDesc() :
rr::Solver
getParamDisplayName() :
rr::Solver
getParamHint() :
rr::Solver
getParamName() :
rr::Solver
getParamPromotedSBML() :
rr::RoadRunner
getProcessTriple() :
rr::CCompiler
,
rr::Compiler
,
rrllvm::Jit
,
rrllvm::LLVMCompiler
getRandom() :
rr::CompiledExecutableModel
,
rr::ExecutableModel
,
rrllvm::LLVMExecutableModel
,
rrllvm::ModelGeneratorContext
getRandomSeed() :
rr::CompiledExecutableModel
,
rr::ExecutableModel
,
rrllvm::LLVMExecutableModel
,
rrllvm::Random
getRateOfChange() :
rr::RoadRunner
getRateOfChangeIds() :
rr::RoadRunner
getRateRuleId() :
rrllvm::LLVMModelDataSymbols
getRateRuleIds() :
rr::RoadRunner
getRateRuleRates() :
rr::ExecutableModel
,
rrllvm::LLVMExecutableModel
getRateRuleSymbols() :
rr::ExecutableModel
,
rrllvm::LLVMExecutableModel
getRateRuleValues() :
rr::CompiledExecutableModel
,
rr::ExecutableModel
,
rrllvm::LLVMExecutableModel
getRatesOfChange() :
rr::RoadRunner
getRatesOfChangeNamedArray() :
rr::RoadRunner
getReactionId() :
rr::CompiledExecutableModel
,
rr::ExecutableModel
,
rrllvm::LLVMExecutableModel
getReactionIds() :
rr::RoadRunner
getReactionIndex() :
rr::CompiledExecutableModel
,
rr::ExecutableModel
,
rrllvm::LLVMExecutableModel
getReactionRate() :
rr::RoadRunner
getReactionRates() :
rr::ExecutableModel
,
rr::RoadRunner
,
rrllvm::LLVMExecutableModel
getReducedEigenValues() :
rr::RoadRunner
getReducedEigenValuesNamedArray() :
rr::RoadRunner
getReducedJacobian() :
rr::RoadRunner
getReducedStoichiometryMatrix() :
rr::RoadRunner
getRegisteredIntegratorNames() :
rr::RoadRunner
getRegisteredSensitivitySolverNames() :
rr::RoadRunner
getRegisteredSteadyStateSolverNames() :
rr::RoadRunner
getRetType() :
rrllvm::GetEventValueCodeGenBase< Derived, FunctionPtrType >
,
rrllvm::GetPiecewiseTriggerCodeGen
getRightSingularVectors() :
rr::SVD
getRK45Description() :
rr::RK45Integrator
getRK45Hint() :
rr::RK45Integrator
getRK45Name() :
rr::RK45Integrator
getRowNames() :
rr::Matrix3D< IndexType, DataType >
getSBML() :
rr::RoadRunner
getScaledElasticityMatrix() :
rr::RoadRunner
getScaledFloatingSpeciesElasticity() :
rr::RoadRunner
getSeed() :
rr::RoadRunner
getSelectedValues() :
rr::RoadRunner
getSelections() :
rr::RoadRunner
getSensitivityMatrix() :
rr::ForwardSensitivitySolver
,
rr::SensitivitySolver
getSensitivityNVectorPtr() :
rr::ForwardSensitivitySolver
getSensitivitySolver() :
rr::RoadRunner
getSensitivitySolverByName() :
rr::RoadRunner
getSettings() :
rr::Solver
getSettingsMap() :
rr::Solver
getSettingsRepr() :
rr::Solver
getSimulateOptions() :
rr::RoadRunner
getSimulationData() :
rr::RoadRunner
getSingularValues() :
rr::SVD
getSolver() :
rr::CVODEIntegrator
getSolverStats() :
rr::KinsolSteadyStateSolver
getSolverStatsFromKinsol() :
rr::KinsolSteadyStateSolver
,
rr::NewtonIteration
getSpeciesReferenceStoichMath() :
rrllvm::LLVMModelSymbols
getStateVector() :
rr::CompiledExecutableModel
,
rr::CVODEIntegrator
,
rr::ExecutableModel
,
rr::ForwardSensitivitySolver
,
rrllvm::LLVMExecutableModel
getStateVectorId() :
rr::ExecutableModel
,
rrllvm::LLVMExecutableModel
getStateVectorRate() :
rr::CompiledExecutableModel
,
rr::ExecutableModel
,
rrllvm::LLVMExecutableModel
getSteadyStateSelections() :
rr::RoadRunner
getSteadyStateSelectionStrings() :
rr::RoadRunner
getSteadyStateSolver() :
rr::RoadRunner
getSteadyStateSolverByName() :
rr::RoadRunner
getSteadyStateThreshold() :
rr::RoadRunner
getSteadyStateValues() :
rr::RoadRunner
getSteadyStateValuesNamedArray() :
rr::RoadRunner
getStoichColIndx() :
rrllvm::LLVMModelDataSymbols
getStoichiometry() :
rr::CompiledExecutableModel
,
rr::ExecutableModel
,
rrllvm::LLVMExecutableModel
getStoichiometryId() :
rr::ExecutableModel
,
rrllvm::LLVMExecutableModel
getStoichiometryIndex() :
rr::ExecutableModel
,
rrllvm::LLVMExecutableModel
getStoichiometryList() :
rrllvm::LLVMModelDataSymbols
getStoichiometryMatrix() :
rr::CompiledExecutableModel
getStoichRowIndx() :
rrllvm::LLVMModelDataSymbols
getString() :
rr::Config
getStructType() :
rrllvm::ModelDataIRBuilder
getSupportedIdTypes() :
rr::CompiledExecutableModel
,
rr::ExecutableModel
,
rr::RoadRunner
,
rrllvm::LLVMExecutableModel
getSymbolIndex() :
rrllvm::LLVMModelDataSymbols
getSymbols() :
rr::NOMSupport
getTemporaryDirectory() :
rr::CModelGenerator
getType() :
rr::Solver
getuCC() :
rr::RoadRunner
getuEE() :
rr::RoadRunner
getUnscaledElasticityMatrix() :
rr::RoadRunner
getUnscaledParameterElasticity() :
rr::RoadRunner
getUnscaledSpeciesElasticity() :
rr::RoadRunner
getValue() :
rr::CompiledExecutableModel
,
rr::ExecutableModel
,
rr::RoadRunner
,
rr::Setting
,
rr::Solver
,
rrllvm::LLVMExecutableModel
getValueAsString() :
rr::Solver
getValues() :
rr::RoadRunnerMap
getVariableNames() :
rr::ForwardSensitivitySolver
getVersion() :
rr::CCompiler
,
rr::Compiler
,
rrllvm::LLVMCompiler
Generated by
1.9.1