roadrunner  2.6.0
Fast simulator for SBML models
rr::NOMSupport Member List

This is the complete list of members for rr::NOMSupport, including all inherited members.

addEmptySetNode(const std::string &sbml) (defined in rr::NOMSupport)rr::NOMSupport
addEmptySetNodes(const std::string &sbml) (defined in rr::NOMSupport)rr::NOMSupport
addMissingModifiers(const std::string &sModel) (defined in rr::NOMSupport)rr::NOMSupport
addSourceSinkNodes(const std::string &sbml) (defined in rr::NOMSupport)rr::NOMSupport
changeConstantForRules(Model *model) (defined in rr::NOMSupport)rr::NOMSupport
checkConsistency() (defined in rr::NOMSupport)rr::NOMSupport
convertLevel1ToLevel2Impl(const std::string &sSBML) (defined in rr::NOMSupport)rr::NOMSupport
convertLevel2ToLevel1Impl(const std::string &sSBML) (defined in rr::NOMSupport)rr::NOMSupport
convertMathMLToString(const std::string &sMathML) (defined in rr::NOMSupport)rr::NOMSupportstatic
convertPowImpl(const std::string &sSBML) (defined in rr::NOMSupport)rr::NOMSupport
convertSBML(const std::string &sModel, const int &nLevel, const int &nVersion) (defined in rr::NOMSupport)rr::NOMSupport
convertSBML(const std::string &sModel, const int &nLevel, const int &nVersion, bool throwError) (defined in rr::NOMSupport)rr::NOMSupport
convertStringToMathML(const std::string &var0) (defined in rr::NOMSupport)rr::NOMSupportstatic
convertTime(const std::string &sArg, const std::string &sTimeSymbol)rr::NOMSupportstatic
convertTimeToCSymbol(const std::string &sArg, const std::string &sTimeSymbol) (defined in rr::NOMSupport)rr::NOMSupport
exists(const std::string &sId) (defined in rr::NOMSupport)rr::NOMSupport
fetAnnotatedModel(const std::string &targetSBML, const std::string &sourceSBML, bool checkModelId) (defined in rr::NOMSupport)rr::NOMSupport
fillStack(stack< std::string > &stack, SBMLSymbol &symbol) (defined in rr::NOMSupport)rr::NOMSupportstatic
fixCommonIssues(const std::string &sbml) (defined in rr::NOMSupport)rr::NOMSupport
fixCommonIssues(const std::string &sbml, const std::string &programName, const std::string &programVersion) (defined in rr::NOMSupport)rr::NOMSupport
getAnnotation(const std::string &sId) (defined in rr::NOMSupport)rr::NOMSupport
getBuiltinFunctionInfo(const std::string &var0) (defined in rr::NOMSupport)rr::NOMSupport
getBuiltinFunctions() (defined in rr::NOMSupport)rr::NOMSupport
getCompartmentIdBySpeciesId(const std::string &sId) (defined in rr::NOMSupport)rr::NOMSupport
getDerivedUnitDefinition(const std::string &sId) (defined in rr::NOMSupport)rr::NOMSupport
getElement(const std::string &sId) (defined in rr::NOMSupport)rr::NOMSupport
getId(SBase &element) (defined in rr::NOMSupport)rr::NOMSupportstatic
getKineticLaw(const int &index)rr::NOMSupport
getlibSBMLVersion() (defined in rr::NOMSupport)rr::NOMSupportstatic
getListOfBoundarySpecies() (defined in rr::NOMSupport)rr::NOMSupport
getListOfBoundarySpeciesIds() (defined in rr::NOMSupport)rr::NOMSupport
getListOfErrors() (defined in rr::NOMSupport)rr::NOMSupport
getListOfFloatingSpecies() (defined in rr::NOMSupport)rr::NOMSupport
getListOfFloatingSpeciesIds() (defined in rr::NOMSupport)rr::NOMSupport
getListOfParameters() (defined in rr::NOMSupport)rr::NOMSupport
getMatchForSymbol(const std::string &sbmlId)rr::NOMSupport
getMetaId(const std::string &sId) (defined in rr::NOMSupport)rr::NOMSupport
getModel() (defined in rr::NOMSupport)rr::NOMSupport
getModelId() (defined in rr::NOMSupport)rr::NOMSupport
getModelName() const (defined in rr::NOMSupport)rr::NOMSupport
getNotes(const std::string &sId) (defined in rr::NOMSupport)rr::NOMSupport
getNthBoundarySpeciesCompartmentName(const int &nIndex) (defined in rr::NOMSupport)rr::NOMSupport
getNthBoundarySpeciesId(const int &nIndex) (defined in rr::NOMSupport)rr::NOMSupport
getNthBoundarySpeciesName(const int &nIndex) (defined in rr::NOMSupport)rr::NOMSupport
getNthCompartmentId(const int &nIndex) (defined in rr::NOMSupport)rr::NOMSupport
getNthCompartmentName(const int &nIndex) (defined in rr::NOMSupport)rr::NOMSupport
getNthConstraint(const int &nIndex, std::string &sMessage) (defined in rr::NOMSupport)rr::NOMSupport
getNthError(const int &nIndex) (defined in rr::NOMSupport)rr::NOMSupport
getNthEvent(const int &arg) (defined in rr::NOMSupport)rr::NOMSupport
getNthFloatingSpeciesCompartmentName(int index)rr::NOMSupport
getNthFloatingSpeciesId(const int &nIndex) (defined in rr::NOMSupport)rr::NOMSupport
getNthFloatingSpeciesName(const int &nIndex) (defined in rr::NOMSupport)rr::NOMSupport
getNthFunctionDefinition(const int &arg) (defined in rr::NOMSupport)rr::NOMSupport
getNthGlobalParameterId(const int &nIndex) (defined in rr::NOMSupport)rr::NOMSupport
getNthGlobalParameterName(const int &nIndex) (defined in rr::NOMSupport)rr::NOMSupport
getNthInitialAssignment(const int &nIndex) (defined in rr::NOMSupport)rr::NOMSupport
getNthInitialAssignmentPair(const int &nIndex) (defined in rr::NOMSupport)rr::NOMSupport
getNthListOfModifiers(const int &nIndex) (defined in rr::NOMSupport)rr::NOMSupport
getNthListOfProducts(const int &nIndex) (defined in rr::NOMSupport)rr::NOMSupport
getNthListOfReactants(const int &nIndex) (defined in rr::NOMSupport)rr::NOMSupport
getNthParameterHasValue(const int &nReactionIndex, const int &nParameterIndex) (defined in rr::NOMSupport)rr::NOMSupport
getNthParameterId(const int &nReactionIndex, const int &nParameterIndex) (defined in rr::NOMSupport)rr::NOMSupport
getNthParameterName(const int &nReactionIndex, const int &nParameterIndex) (defined in rr::NOMSupport)rr::NOMSupport
getNthParameterValue(const int &nReactionIndex, const int &nParameterIndex) (defined in rr::NOMSupport)rr::NOMSupport
getNthProductName(const int &nIndex, const int &nProduct) (defined in rr::NOMSupport)rr::NOMSupport
getNthProductStoichiometry(const int &nIndex, const int &nProduct) (defined in rr::NOMSupport)rr::NOMSupport
getNthProductStoichiometryDouble(const int &nIndex, const int &nProduct) (defined in rr::NOMSupport)rr::NOMSupport
getNthReactantName(const int &nIndex, const int &nReactant) (defined in rr::NOMSupport)rr::NOMSupport
getNthReactantStoichiometry(const int &nIndex, const int &nReactant) (defined in rr::NOMSupport)rr::NOMSupport
getNthReactantStoichiometryDouble(const int &nIndex, const int &nReactant) (defined in rr::NOMSupport)rr::NOMSupport
getNthReactionId(const int &nIndex) (defined in rr::NOMSupport)rr::NOMSupport
getNthReactionName(const int &nIndex) (defined in rr::NOMSupport)rr::NOMSupport
getNthRule(const int &nIndex) (defined in rr::NOMSupport)rr::NOMSupport
getNthRuleType(const int &arg) (defined in rr::NOMSupport)rr::NOMSupport
getNthUseValuesFromTriggerTime(const int &arg) (defined in rr::NOMSupport)rr::NOMSupport
getNumBoundarySpecies() (defined in rr::NOMSupport)rr::NOMSupport
getNumCompartments() (defined in rr::NOMSupport)rr::NOMSupport
getNumConstraints() (defined in rr::NOMSupport)rr::NOMSupport
getNumErrors() (defined in rr::NOMSupport)rr::NOMSupport
getNumEvents() (defined in rr::NOMSupport)rr::NOMSupport
getNumFloatingSpecies() (defined in rr::NOMSupport)rr::NOMSupport
getNumFunctionDefinitions() (defined in rr::NOMSupport)rr::NOMSupport
getNumGlobalParameters() (defined in rr::NOMSupport)rr::NOMSupport
getNumInitialAssignments() (defined in rr::NOMSupport)rr::NOMSupport
getNumParameters(int reaction)rr::NOMSupport
getNumProducts(const int &var0) (defined in rr::NOMSupport)rr::NOMSupport
getNumReactants(const int &var0) (defined in rr::NOMSupport)rr::NOMSupport
getNumReactions()rr::NOMSupport
getNumRules() (defined in rr::NOMSupport)rr::NOMSupport
getOutsideCompartment(const std::string &var0) (defined in rr::NOMSupport)rr::NOMSupport
getParamPromotedSBML(const std::string &sArg) (defined in rr::NOMSupport)rr::NOMSupportstatic
getSBML() (defined in rr::NOMSupport)rr::NOMSupport
getSBMLDocument() (defined in rr::NOMSupport)rr::NOMSupport
getSBOCapableSBML(const std::string &sModel) (defined in rr::NOMSupport)rr::NOMSupport
getSBOTerm(const std::string &sId) (defined in rr::NOMSupport)rr::NOMSupport
getSymbols(const ASTNode *math)rr::NOMSupportstatic
getValue(const std::string &sId) (defined in rr::NOMSupport)rr::NOMSupport
hasInitialAmount(const std::string &sId) (defined in rr::NOMSupport)rr::NOMSupport
hasInitialConcentration(const std::string &sId) (defined in rr::NOMSupport)rr::NOMSupport
hasSBOTerm(const std::string &sId) (defined in rr::NOMSupport)rr::NOMSupport
hasValue(const std::string &sId) (defined in rr::NOMSupport)rr::NOMSupport
isBoundary(const std::string &sId)rr::NOMSupport
isCompartment(const std::string &sId)rr::NOMSupport
isConstantImpl(const std::string &sId) (defined in rr::NOMSupport)rr::NOMSupport
isFloating(const std::string &sId) (defined in rr::NOMSupport)rr::NOMSupport
isReactionReversible(const int &nIndex) (defined in rr::NOMSupport)rr::NOMSupport
isSpecies(const std::string &sId) (defined in rr::NOMSupport)rr::NOMSupport
loadFromFile(const std::string &fileName) (defined in rr::NOMSupport)rr::NOMSupport
loadParameterPromotedSBML(const std::string &var0, const std::string &sTimeSymbol) (defined in rr::NOMSupport)rr::NOMSupport
loadSBML(const std::string &var0) (defined in rr::NOMSupport)rr::NOMSupport
loadSBML(const std::string &var0, const std::string &sTimeSymbol) (defined in rr::NOMSupport)rr::NOMSupport
multiplyCompartment(const std::string &sbmlId, std::string &compartmentId) (defined in rr::NOMSupport)rr::NOMSupport
needEmptySetNode(Model model) (defined in rr::NOMSupport)rr::NOMSupport
needSinkNode(Model model) (defined in rr::NOMSupport)rr::NOMSupport
needSourceNode(Model model) (defined in rr::NOMSupport)rr::NOMSupport
NOMSupport() (defined in rr::NOMSupport)rr::NOMSupport
removeJD1Layout(const std::string &sSBML) (defined in rr::NOMSupport)rr::NOMSupport
removeJD2Layout(const std::string &sSBML) (defined in rr::NOMSupport)rr::NOMSupport
removeLayoutInformation(const std::string &sSBML) (defined in rr::NOMSupport)rr::NOMSupport
reorderAssignmentRules(deque< Rule * > &assignmentRules)rr::NOMSupportstatic
reorderRules(SBMLDocument &oc, Model &model)rr::NOMSupportstatic
replaceSymbol(ASTNode *node, const std::string &oldId, const std::string &newId) (defined in rr::NOMSupport)rr::NOMSupport
setAnnotation(const std::string &sId, const std::string &sAnnotation) (defined in rr::NOMSupport)rr::NOMSupport
setModelId(const std::string &sId) (defined in rr::NOMSupport)rr::NOMSupport
setNotes(const std::string &sId, const std::string &sNotes) (defined in rr::NOMSupport)rr::NOMSupport
setSBOTerm(const std::string &sId, const int &nSBOTerm) (defined in rr::NOMSupport)rr::NOMSupport
setValue(const std::string &sId, const double &dValue) (defined in rr::NOMSupport)rr::NOMSupport
setValue(Model *model, const std::string &id, const double &value, const bool &throwIfNotFound) (defined in rr::NOMSupport)rr::NOMSupport
testASTTime() (defined in rr::NOMSupport)rr::NOMSupport
validateSBML(const std::string &sModel) (defined in rr::NOMSupport)rr::NOMSupport
validateWithConsistency(const std::string &sModel) (defined in rr::NOMSupport)rr::NOMSupport
~NOMSupport() (defined in rr::NOMSupport)rr::NOMSupport