roadrunner
2.6.0
Fast simulator for SBML models
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This is the complete list of members for rr::CModelGenerator, including all inherited members.
cleanEquation(ASTNode *ast) | rr::CompiledModelGenerator | protectedstatic |
cleanEquation(const std::string &equation) (defined in rr::CompiledModelGenerator) | rr::CompiledModelGenerator | protectedstatic |
CModelGenerator(const std::string &tempFolder, const std::string &supportCodeFolder, const std::string &compiler) (defined in rr::CModelGenerator) | rr::CModelGenerator | |
CompiledModelGenerator() (defined in rr::CompiledModelGenerator) | rr::CompiledModelGenerator | protected |
createModel(const std::string &sbml, uint options) (defined in rr::CModelGenerator) | rr::CModelGenerator | virtual |
expressionContainsSymbol(ASTNode *ast, const std::string &symbol) (defined in rr::CompiledModelGenerator) | rr::CompiledModelGenerator | protected |
expressionContainsSymbol(const std::string &expression, const std::string &symbol) (defined in rr::CompiledModelGenerator) | rr::CompiledModelGenerator | protected |
getCompiler() | rr::CModelGenerator | virtual |
getHeaderCode() | rr::CModelGenerator | |
getInfo() | rr::CompiledModelGenerator | protectedvirtual |
getSourceCode() (defined in rr::CModelGenerator) | rr::CModelGenerator | |
getSourceCodeFileName() (defined in rr::CModelGenerator) | rr::CModelGenerator | |
getSpecies(const std::string &id) (defined in rr::CompiledModelGenerator) | rr::CompiledModelGenerator | protected |
getTemporaryDirectory() | rr::CModelGenerator | virtual |
initializeL0(int &nrRows, int &nrCols) (defined in rr::CompiledModelGenerator) | rr::CompiledModelGenerator | protected |
mComputeAndAssignConsevationLaws (defined in rr::CompiledModelGenerator) | rr::CompiledModelGenerator | protected |
mFixAmountCompartments (defined in rr::CompiledModelGenerator) | rr::CompiledModelGenerator | protected |
mLibStruct | rr::CompiledModelGenerator | protected |
mNOM | rr::CompiledModelGenerator | protected |
ms | rr::CompiledModelGenerator | protected |
mWarnings (defined in rr::CompiledModelGenerator) | rr::CompiledModelGenerator | protected |
numAdditionalRates() (defined in rr::CompiledModelGenerator) | rr::CompiledModelGenerator | protected |
readCompartments() (defined in rr::CompiledModelGenerator) | rr::CompiledModelGenerator | protected |
readGlobalParameters() (defined in rr::CompiledModelGenerator) | rr::CompiledModelGenerator | protected |
readLocalParameters(const int &numReactions, std::vector< int > &localParameterDimensions, int &totalLocalParmeters) (defined in rr::CompiledModelGenerator) | rr::CompiledModelGenerator | protected |
reset() (defined in rr::CompiledModelGenerator) | rr::CompiledModelGenerator | protected |
setCompiler(const std::string &compiler) | rr::CModelGenerator | virtual |
setTemporaryDirectory(const std::string &path) (defined in rr::CModelGenerator) | rr::CModelGenerator | virtual |
substituteTerms(const std::string &reactionName, const std::string &inputEquation, bool bFixAmounts) (defined in rr::CompiledModelGenerator) | rr::CompiledModelGenerator | protected |
substituteTerms(const int &numReactions, const std::string &reactionName, const std::string &equation) (defined in rr::CompiledModelGenerator) | rr::CompiledModelGenerator | protected |
writeComputeAllRatesOfChange(CodeBuilder &sb, const int &numIndependentSpecies, const int &numDependentSpecies, ls::DoubleMatrix &L0)=0 (defined in rr::CompiledModelGenerator) | rr::CompiledModelGenerator | protectedpure virtual |
writeDouble(const double &value, const std::string &format="%G") (defined in rr::CompiledModelGenerator) | rr::CompiledModelGenerator | protected |
writeUpdateDependentSpecies(CodeBuilder &sb, const int &numIndependentSpecies, const int &numDependentSpecies, ls::DoubleMatrix &L0)=0 (defined in rr::CompiledModelGenerator) | rr::CompiledModelGenerator | protectedpure virtual |
~CModelGenerator() (defined in rr::CModelGenerator) | rr::CModelGenerator | virtual |
~CompiledModelGenerator() (defined in rr::CompiledModelGenerator) | rr::CompiledModelGenerator | protectedvirtual |