Here is a list of all documented class members with links to the class documentation for each member:
- g -
- get()
: rr::Setting
- get_if()
: rr::Setting
- getAbsoluteToleranceVector()
: rr::CVODEIntegrator
, rr::Integrator
- getAs()
: rr::Setting
- getAssigmentRules()
: rrllvm::LLVMModelSymbols
- getAssignmentRuleIds()
: rr::RoadRunner
- getBoundarySpeciesAmounts()
: rr::CompiledExecutableModel
, rr::ExecutableModel
, rrllvm::LLVMExecutableModel
- getBoundarySpeciesAmountsNamedArray()
: rr::RoadRunner
- getBoundarySpeciesAmountsV()
: rr::RoadRunner
- getBoundarySpeciesByIndex()
: rr::RoadRunner
- getBoundarySpeciesConcentrationIds()
: rr::RoadRunner
- getBoundarySpeciesConcentrations()
: rr::CompiledExecutableModel
, rr::ExecutableModel
, rrllvm::LLVMExecutableModel
- getBoundarySpeciesConcentrationsNamedArray()
: rr::RoadRunner
- getBoundarySpeciesConcentrationsV()
: rr::RoadRunner
- getBoundarySpeciesId()
: rrllvm::LLVMModelDataSymbols
- getBoundarySpeciesIds()
: rr::RoadRunner
- getBoundarySpeciesIndex()
: rrllvm::LLVMModelDataSymbols
- getBoundarySpeciesInitAmounts()
: rr::ExecutableModel
, rrllvm::LLVMExecutableModel
- getBoundarySpeciesInitConcentrations()
: rr::ExecutableModel
, rrllvm::LLVMExecutableModel
- getBoundarySpeciesInitIndex()
: rrllvm::LLVMModelDataSymbols
- getBuilderNonOwning()
: rrllvm::Jit
- getCC()
: rr::RoadRunner
- getColNames()
: rr::Matrix3D< IndexType, DataType >
- getColoredOutput()
: rr::Logger
- getCompartmentByIndex()
: rr::RoadRunner
- getCompartmentId()
: rrllvm::LLVMModelDataSymbols
- getCompartmentIds()
: rr::RoadRunner
- getCompartmentIndexForBoundarySpecies()
: rrllvm::LLVMModelDataSymbols
- getCompartmentIndexForFloatingSpecies()
: rrllvm::LLVMModelDataSymbols
- getCompartmentInitIndex()
: rrllvm::LLVMModelDataSymbols
- getCompartmentInitVolumes()
: rr::ExecutableModel
, rrllvm::LLVMExecutableModel
- getCompartmentVolumes()
: rr::CompiledExecutableModel
, rr::ExecutableModel
, rrllvm::LLVMExecutableModel
- getCompiledModelFromCache()
: rrllvm::Jit
, rrllvm::LLJit
- getCompiledModuleStream()
: rrllvm::Jit
- getCompiler()
: rr::CModelGenerator
, rr::RoadRunner
- getConfigFilePath()
: rr::Config
- getConservedMoietyAnalysis()
: rr::RoadRunner
- getConservedMoietyGlobalParameterIndex()
: rrllvm::LLVMModelDataSymbols
- getConservedMoietyId()
: rrllvm::LLVMModelDataSymbols
- getConservedMoietyIndex()
: rrllvm::LLVMModelDataSymbols
- getConservedMoietySize()
: rrllvm::LLVMModelDataSymbols
- getConservedMoietyValues()
: rr::RoadRunner
- getContextNonOwning()
: rrllvm::Jit
- getCSRMatrixGetNZDecl()
: rrllvm::ModelDataIRBuilder
- getCSRMatrixSetNZDecl()
: rrllvm::ModelDataIRBuilder
- getCSRSparseStructType()
: rrllvm::ModelDataIRBuilder
- getCurrentLevelAsString()
: rr::Logger
- getCurrentSBML()
: rr::RoadRunner
- getCurrentTime()
: rr::RoadRunner
- getCvodeMemory()
: rr::CVODEIntegrator
- getDataLayout()
: rrllvm::Jit
, rrllvm::LLJit
- getDefaultCompiler()
: rr::Compiler
- getDefaultTargetMachine()
: rrllvm::Jit
- getDefaultTargetTriple()
: rr::CCompiler
, rr::Compiler
, rrllvm::LLVMCompiler
- getDependentFloatingSpeciesAmountsNamedArray()
: rr::RoadRunner
- getDependentFloatingSpeciesAmountsV()
: rr::RoadRunner
- getDependentFloatingSpeciesConcentrationsNamedArray()
: rr::RoadRunner
- getDependentFloatingSpeciesConcentrationsV()
: rr::RoadRunner
- getDependentFloatingSpeciesIds()
: rr::RoadRunner
- getDependentRatesOfChange()
: rr::RoadRunner
- getDependentRatesOfChangeNamedArray()
: rr::RoadRunner
- getDepSpeciesIndexForConservedMoietyId()
: rrllvm::LLVMModelDataSymbols
- getDescription()
: rr::BasicNewtonIteration
, rr::CVODEIntegrator
, rr::EulerIntegrator
, rr::FixedPointIteration
, rr::ForwardSensitivitySolver
, rr::GillespieIntegrator
, rr::LinesearchNewtonIteration
, rr::NewtonIteration
, rr::Registrable
, rr::RK45Integrator
, rr::RK4Integrator
, rr::Solver
, rr::SteadyStateSolverDecorator
- getDiffStepSize()
: rr::RoadRunner
- getDisplayName()
: rr::Solver
- getDouble()
: rr::Config
- getEE()
: rr::RoadRunner
- getEigenValueIds()
: rr::RoadRunner
- getEventBufferSize()
: rrllvm::LLVMModelDataSymbols
- getEventIndex()
: rr::CompiledExecutableModel
, rr::ExecutableModel
, rrllvm::LLVMExecutableModel
- getEventRoots()
: rr::CompiledExecutableModel
, rr::ExecutableModel
, rrllvm::LLVMExecutableModel
- getEventTriggers()
: rr::ExecutableModel
, rrllvm::LLVMExecutableModel
- getExecutableModelDesc()
: rr::CompiledExecutableModel
, rrllvm::LLVMExecutableModel
- getExistingIntegratorNames()
: rr::RoadRunner
- getExistingSensitivitySolverNames()
: rr::RoadRunner
- getExistingSteadyStateSolverNames()
: rr::RoadRunner
- getExtendedVersionInfo()
: rr::RoadRunner
- getFieldName()
: rrllvm::LLVMModelDataSymbols
- getFileName()
: rr::Logger
- getFlags()
: rr::CompiledExecutableModel
, rr::ExecutableModel
, rrllvm::LLVMExecutableModel
- getFloatingSpeciesAmountRate()
: rr::ExecutableModel
, rrllvm::LLVMExecutableModel
- getFloatingSpeciesAmountRates()
: rr::ExecutableModel
, rrllvm::LLVMExecutableModel
- getFloatingSpeciesAmounts()
: rr::CompiledExecutableModel
, rr::ExecutableModel
, rrllvm::LLVMExecutableModel
- getFloatingSpeciesAmountsNamedArray()
: rr::RoadRunner
- getFloatingSpeciesAmountsV()
: rr::RoadRunner
- getFloatingSpeciesByIndex()
: rr::RoadRunner
- getFloatingSpeciesConcentrationIds()
: rr::RoadRunner
- getFloatingSpeciesConcentrationRates()
: rr::ExecutableModel
, rrllvm::LLVMExecutableModel
- getFloatingSpeciesConcentrations()
: rr::CompiledExecutableModel
, rr::ExecutableModel
, rrllvm::LLVMExecutableModel
- getFloatingSpeciesConcentrationsNamedArray()
: rr::RoadRunner
- getFloatingSpeciesConcentrationsV()
: rr::RoadRunner
- getFloatingSpeciesId()
: rrllvm::LLVMModelDataSymbols
- getFloatingSpeciesIds()
: rr::RoadRunner
, rrllvm::LLVMModelDataSymbols
- getFloatingSpeciesIndex()
: rrllvm::LLVMModelDataSymbols
- getFloatingSpeciesInitAmounts()
: rr::ExecutableModel
, rrllvm::LLVMExecutableModel
- getFloatingSpeciesInitConcentrations()
: rr::ExecutableModel
, rrllvm::LLVMExecutableModel
- getFloatingSpeciesInitialConcentrationIds()
: rr::RoadRunner
- getFloatingSpeciesInitialConcentrations()
: rr::RoadRunner
- getFloatingSpeciesInitialConditionIds()
: rr::RoadRunner
- getFloatingSpeciesInitIndex()
: rrllvm::LLVMModelDataSymbols
- getFloatingSpeciesSize()
: rrllvm::LLVMModelDataSymbols
- getFluxThreshold()
: rr::RoadRunner
- getFormattingPattern()
: rr::Logger
- getFullEigenValues()
: rr::RoadRunner
- getFullEigenValuesNamedArray()
: rr::RoadRunner
- getFullJacobian()
: rr::RoadRunner
- getFullStoichiometryMatrix()
: rr::RoadRunner
- getGlobalParameterByIndex()
: rr::RoadRunner
- getGlobalParameterByName()
: rr::RoadRunner
- getGlobalParameterId()
: rr::ExecutableModel
, rrllvm::LLVMExecutableModel
, rrllvm::LLVMModelDataSymbols
- getGlobalParameterIds()
: rr::RoadRunner
- getGlobalParameterIndex()
: rr::CompiledExecutableModel
, rr::ExecutableModel
, rrllvm::LLVMExecutableModel
, rrllvm::LLVMModelDataSymbols
- getGlobalParameterInitIndex()
: rrllvm::LLVMModelDataSymbols
- getGlobalParameterInitValues()
: rr::ExecutableModel
, rrllvm::LLVMExecutableModel
- getGlobalParameterNames()
: rr::ForwardSensitivitySolver
- getGlobalParameterValues()
: rr::CompiledExecutableModel
, rr::ExecutableModel
, rr::RoadRunner
, rrllvm::LLVMExecutableModel
- getHasOnlySubstanceUnits()
: rr::RoadRunner
- getHeaderCode()
: rr::CModelGenerator
- getHint()
: rr::BasicNewtonIteration
, rr::CVODEIntegrator
, rr::EulerIntegrator
, rr::FixedPointIteration
, rr::ForwardSensitivitySolver
, rr::GillespieIntegrator
, rr::LinesearchNewtonIteration
, rr::NewtonIteration
, rr::Registrable
, rr::RK45Integrator
, rr::RK4Integrator
, rr::Solver
, rr::SteadyStateSolverDecorator
- getHostCPUName()
: rr::CCompiler
, rr::Compiler
, rrllvm::LLVMCompiler
- getIds()
: rr::CompiledExecutableModel
, rr::ExecutableModel
, rr::RoadRunner
, rrllvm::LLVMExecutableModel
- getIndependentBoundarySpeciesSize()
: rrllvm::LLVMModelDataSymbols
- getIndependentCompartmentSize()
: rrllvm::LLVMModelDataSymbols
- getIndependentFloatingSpeciesAmountsNamedArray()
: rr::RoadRunner
- getIndependentFloatingSpeciesAmountsV()
: rr::RoadRunner
- getIndependentFloatingSpeciesConcentrationsNamedArray()
: rr::RoadRunner
- getIndependentFloatingSpeciesConcentrationsV()
: rr::RoadRunner
- getIndependentFloatingSpeciesIds()
: rr::RoadRunner
- getIndependentFloatingSpeciesSize()
: rrllvm::LLVMModelDataSymbols
- getIndependentGlobalParameterSize()
: rrllvm::LLVMModelDataSymbols
- getIndependentRatesOfChange()
: rr::RoadRunner
- getIndependentRatesOfChangeNamedArray()
: rr::RoadRunner
- getIndex()
: rr::Matrix3D< IndexType, DataType >
- getIndSpeciesIndexForConservedMoietyId()
: rrllvm::LLVMModelDataSymbols
- getInfo()
: rr::CompiledModelGenerator
, rr::RoadRunner
- getInitialAssignmentIds()
: rr::RoadRunner
- getInitialAssignmentRules()
: rrllvm::LLVMModelSymbols
- getInitialValues()
: rrllvm::LLVMModelSymbols
- getInstance()
: rr::IntegratorFactory
, rr::RegistrationFactory
, rr::SteadyStateSolverFactory
- getInstanceCount()
: rr::RoadRunner
- getInstanceID()
: rr::RoadRunner
- getInt()
: rr::Config
- getIntegrationMethod()
: rr::CVODEIntegrator
, rr::EulerIntegrator
, rr::GillespieIntegrator
, rr::RK45Integrator
, rr::RK4Integrator
- getIntegrator()
: rr::RoadRunner
- getIntegratorByName()
: rr::RoadRunner
- getItem()
: rr::BasicDictionary
, rr::Dictionary
, rr::EulerIntegrator
, rr::LoadSBMLOptions
, rr::Matrix3D< IndexType, DataType >
- getItems()
: rr::RoadRunnerMap
- getKeys()
: rr::BasicDictionary
, rr::Dictionary
, rr::EulerIntegrator
, rr::LoadSBMLOptions
, rr::RoadRunnerMap
- getKineticLaw()
: rr::NOMSupport
, rr::RoadRunner
- getKinsolMemory()
: rr::KinsolSteadyStateSolver
- getKMatrix()
: rr::RoadRunner
- getLeftSingularVectors()
: rr::SVD
- getLevel()
: rr::Logger
- getListener()
: rr::CVODEIntegrator
, rr::EulerIntegrator
, rr::GillespieIntegrator
, rr::RK45Integrator
, rr::RK4Integrator
- getMatchForSymbol()
: rr::NOMSupport
- getMaxTries()
: rrllvm::Random
- getModel()
: rr::RoadRunner
, rr::Solver
- getModelId()
: rr::RoadRunner
- getModelName()
: rr::CompiledExecutableModel
, rr::ExecutableModel
, rr::RoadRunner
, rrllvm::LLVMExecutableModel
- getModelParametersAsMap()
: rr::ForwardSensitivitySolver
- getModelParametersAsVector()
: rr::ForwardSensitivitySolver
- getModuleAsString()
: rrllvm::Jit
, rrllvm::LLJit
- getModuleNonOwning()
: rrllvm::Jit
- getName()
: rr::BasicNewtonIteration
, rr::CVODEIntegrator
, rr::EulerIntegrator
, rr::FixedPointIteration
, rr::ForwardSensitivitySolver
, rr::GillespieIntegrator
, rr::LinesearchNewtonIteration
, rr::NewtonIteration
, rr::Registrable
, rr::RK45Integrator
, rr::RK4Integrator
, rr::Solver
, rr::SteadyStateSolverDecorator
- getNextPendingEventTime()
: rrllvm::EventQueue
- getNrMatrix()
: rr::RoadRunner
- getNthFloatingSpeciesCompartmentName()
: rr::NOMSupport
- getNumberOfBoundarySpecies()
: rr::RoadRunner
- getNumberOfCompartments()
: rr::RoadRunner
- getNumberOfDependentSpecies()
: rr::RoadRunner
- getNumberOfFloatingSpecies()
: rr::RoadRunner
- getNumberOfGlobalParameters()
: rr::RoadRunner
- getNumberOfIndependentSpecies()
: rr::RoadRunner
- getNumberOfReactions()
: rr::RoadRunner
- getNumBoundarySpecies()
: rr::CompiledExecutableModel
, rr::ExecutableModel
, rrllvm::LLVMExecutableModel
- getNumDepFloatingSpecies()
: rr::CompiledExecutableModel
, rr::ExecutableModel
, rrllvm::LLVMExecutableModel
- getNumFloatingSpecies()
: rr::CompiledExecutableModel
, rr::ExecutableModel
, rrllvm::LLVMExecutableModel
- getNumGlobalParameters()
: rr::CompiledExecutableModel
, rr::ExecutableModel
, rrllvm::LLVMExecutableModel
- getNumIndFloatingSpecies()
: rr::CompiledExecutableModel
, rr::ExecutableModel
, rrllvm::LLVMExecutableModel
- getNumParameters()
: rr::NOMSupport
- getNumParams()
: rr::Solver
- getNumPiecewiseTriggers()
: rr::ExecutableModel
, rrllvm::LLVMExecutableModel
- getNumReactions()
: rr::CompiledExecutableModel
, rr::ExecutableModel
, rr::NOMSupport
, rrllvm::LLVMExecutableModel
- getNumThreads()
: rr::RoadRunnerMap
- getOptions()
: rr::RoadRunner
- getParamDesc()
: rr::Solver
- getParamDisplayName()
: rr::Solver
- getParamHint()
: rr::Solver
- getParamName()
: rr::Solver
- getParamPromotedSBML()
: rr::RoadRunner
- getProcessTriple()
: rr::CCompiler
, rr::Compiler
, rrllvm::Jit
, rrllvm::LLVMCompiler
- getRandom()
: rr::CompiledExecutableModel
, rr::ExecutableModel
, rrllvm::LLVMExecutableModel
, rrllvm::ModelGeneratorContext
- getRandomSeed()
: rr::CompiledExecutableModel
, rr::ExecutableModel
, rrllvm::LLVMExecutableModel
, rrllvm::Random
- getRateOfChange()
: rr::RoadRunner
- getRateOfChangeIds()
: rr::RoadRunner
- getRateRuleId()
: rrllvm::LLVMModelDataSymbols
- getRateRuleIds()
: rr::RoadRunner
- getRateRuleRates()
: rr::ExecutableModel
, rrllvm::LLVMExecutableModel
- getRateRuleSymbols()
: rr::ExecutableModel
, rrllvm::LLVMExecutableModel
- getRateRuleValues()
: rr::CompiledExecutableModel
, rr::ExecutableModel
, rrllvm::LLVMExecutableModel
- getRatesOfChange()
: rr::RoadRunner
- getRatesOfChangeNamedArray()
: rr::RoadRunner
- getReactionId()
: rr::CompiledExecutableModel
, rr::ExecutableModel
, rrllvm::LLVMExecutableModel
- getReactionIds()
: rr::RoadRunner
- getReactionIndex()
: rr::CompiledExecutableModel
, rr::ExecutableModel
, rrllvm::LLVMExecutableModel
- getReactionRate()
: rr::RoadRunner
- getReactionRates()
: rr::ExecutableModel
, rr::RoadRunner
, rrllvm::LLVMExecutableModel
- getReducedEigenValues()
: rr::RoadRunner
- getReducedEigenValuesNamedArray()
: rr::RoadRunner
- getReducedJacobian()
: rr::RoadRunner
- getReducedStoichiometryMatrix()
: rr::RoadRunner
- getRegisteredIntegratorNames()
: rr::RoadRunner
- getRegisteredSensitivitySolverNames()
: rr::RoadRunner
- getRegisteredSteadyStateSolverNames()
: rr::RoadRunner
- getRetType()
: rrllvm::GetEventValueCodeGenBase< Derived, FunctionPtrType >
, rrllvm::GetPiecewiseTriggerCodeGen
- getRightSingularVectors()
: rr::SVD
- getRK45Description()
: rr::RK45Integrator
- getRK45Hint()
: rr::RK45Integrator
- getRK45Name()
: rr::RK45Integrator
- getRowNames()
: rr::Matrix3D< IndexType, DataType >
- getSBML()
: rr::RoadRunner
- getScaledElasticityMatrix()
: rr::RoadRunner
- getScaledFloatingSpeciesElasticity()
: rr::RoadRunner
- getSeed()
: rr::RoadRunner
- getSelectedValues()
: rr::RoadRunner
- getSelections()
: rr::RoadRunner
- getSensitivityMatrix()
: rr::ForwardSensitivitySolver
, rr::SensitivitySolver
- getSensitivityNVectorPtr()
: rr::ForwardSensitivitySolver
- getSensitivitySolver()
: rr::RoadRunner
- getSensitivitySolverByName()
: rr::RoadRunner
- getSettings()
: rr::Solver
- getSettingsMap()
: rr::Solver
- getSettingsRepr()
: rr::Solver
- getSimulateOptions()
: rr::RoadRunner
- getSimulationData()
: rr::RoadRunner
- getSingularValues()
: rr::SVD
- getSolver()
: rr::CVODEIntegrator
- getSolverStats()
: rr::KinsolSteadyStateSolver
- getSolverStatsFromKinsol()
: rr::KinsolSteadyStateSolver
, rr::NewtonIteration
- getSpeciesReferenceStoichMath()
: rrllvm::LLVMModelSymbols
- getStateVector()
: rr::CompiledExecutableModel
, rr::CVODEIntegrator
, rr::ExecutableModel
, rr::ForwardSensitivitySolver
, rrllvm::LLVMExecutableModel
- getStateVectorId()
: rr::ExecutableModel
, rrllvm::LLVMExecutableModel
- getStateVectorRate()
: rr::CompiledExecutableModel
, rr::ExecutableModel
, rrllvm::LLVMExecutableModel
- getSteadyStateSelections()
: rr::RoadRunner
- getSteadyStateSelectionStrings()
: rr::RoadRunner
- getSteadyStateSolver()
: rr::RoadRunner
- getSteadyStateSolverByName()
: rr::RoadRunner
- getSteadyStateThreshold()
: rr::RoadRunner
- getSteadyStateValues()
: rr::RoadRunner
- getSteadyStateValuesNamedArray()
: rr::RoadRunner
- getStoichColIndx()
: rrllvm::LLVMModelDataSymbols
- getStoichiometry()
: rr::CompiledExecutableModel
, rr::ExecutableModel
, rrllvm::LLVMExecutableModel
- getStoichiometryId()
: rr::ExecutableModel
, rrllvm::LLVMExecutableModel
- getStoichiometryIndex()
: rr::ExecutableModel
, rrllvm::LLVMExecutableModel
- getStoichiometryList()
: rrllvm::LLVMModelDataSymbols
- getStoichiometryMatrix()
: rr::CompiledExecutableModel
- getStoichRowIndx()
: rrllvm::LLVMModelDataSymbols
- getString()
: rr::Config
- getStructType()
: rrllvm::ModelDataIRBuilder
- getSupportedIdTypes()
: rr::CompiledExecutableModel
, rr::ExecutableModel
, rr::RoadRunner
, rrllvm::LLVMExecutableModel
- getSymbolIndex()
: rrllvm::LLVMModelDataSymbols
- getSymbols()
: rr::NOMSupport
- getTemporaryDirectory()
: rr::CModelGenerator
- getType()
: rr::Solver
- getuCC()
: rr::RoadRunner
- getuEE()
: rr::RoadRunner
- getUnscaledElasticityMatrix()
: rr::RoadRunner
- getUnscaledParameterElasticity()
: rr::RoadRunner
- getUnscaledSpeciesElasticity()
: rr::RoadRunner
- getValue()
: rr::CompiledExecutableModel
, rr::ExecutableModel
, rr::RoadRunner
, rr::Setting
, rr::Solver
, rrllvm::LLVMExecutableModel
- getValueAsString()
: rr::Solver
- getValues()
: rr::RoadRunnerMap
- getVariableNames()
: rr::ForwardSensitivitySolver
- getVersion()
: rr::CCompiler
, rr::Compiler
, rrllvm::LLVMCompiler
- GLOBAL_PARAMETER
: rr::SelectionRecord
- GLOBAL_PARAMETER_RATE
: rr::SelectionRecord
- globalParameterMap
: rr::ForwardSensitivitySolver