5 #ifndef ROADRUNNER_SENSITIVITYSOLVER_H
6 #define ROADRUNNER_SENSITIVITYSOLVER_H
17 class ForwardSensitivitySolver;
44 using SensitivitySolver::SensitivitySolver;
55 virtual double integrate(
double t0,
double hstep) = 0;
76 double start,
double stop,
int num,
77 std::vector<std::string> params,
78 std::vector<std::string> species,
89 using SensitivitySolver::SensitivitySolver;
112 std::vector<std::string> params = std::vector<std::string>(),
Contains the base class for RoadRunner solvers.
A basic local 3D version of the Matrix class, based on initializer_list.
Definition: Matrix3D.h:17
A basic local matrix class, based on the libstruct version.
Definition: Matrix.h:18
generic interface for all SensitivitySolvers
Definition: SensitivitySolver.h:22
virtual rr::Matrix< double > getSensitivityMatrix(int k=0)=0
get current values of sensitivities of model variables to parameters.
Base class for all integrators and steady state solvers.
Definition: Solver.h:39
genetic interface for sensitivity solvers that solve for steady state before computing model sensitiv...
Definition: SensitivitySolver.h:87
virtual double solveSteadyState()=0
solves the model for steady state.
virtual rr::Matrix< double > solveSensitivities(std::vector< std::string > params=std::vector< std::string >(), int k=0)=0
compute sensitivities at steady state
generic interface for sensitivity solvers that integrate the model and compute sensitivities at each ...
Definition: SensitivitySolver.h:42
virtual Matrix3D< double, double > solveSensitivities(double start, double stop, int num, std::vector< std::string > params, std::vector< std::string > species, int k)=0
simulate a timeseries with sensitivities from start to step with num data points.
virtual double integrate(double t0, double hstep)=0
integrate the model from t0 to t0 + hstep.