roadrunner  2.6.0
Fast simulator for SBML models
rr::CompiledExecutableModel Member List

This is the complete list of members for rr::CompiledExecutableModel, including all inherited members.

applyEventAssignment(int eventId, double *values) (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModelvirtual
applyEvents(double timeEnd, const unsigned char *previousEventStatus, const double *initialState, double *finalState)rr::CompiledExecutableModelvirtual
applyPendingEvents(double timeEnd) (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModelvirtual
cAssignRates_a (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModel
cAssignRates_b (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModel
ccomputeAllRatesOfChange (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModel
ccomputeConservedTotals (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModel
ccomputeEventPriorities (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModel
cComputeReactionRates (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModel
ccomputeRules (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModel
cconvertToAmounts (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModel
cconvertToConcentrations (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModel
cevalEvents (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModel
cevalInitialAssignments (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModel
cevalModel (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModel
cgetConcentration (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModel
cGetCurrentValues (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModel
cgetModelName (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModel
cgetNumLocalParameters (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModel
cinitializeInitialConditions (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModel
cInitializeRateRuleSymbols (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModel
cInitializeRates (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModel
cInitModel (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModel
cInitModelData (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModel
CompiledExecutableModel(const ModelSymbols &symbols, ModelSharedLibrary *dll)rr::CompiledExecutableModel
CompiledModelState (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModelfriend
computeAllRatesOfChange() (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModelvirtual
computeConservedTotals() (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModelvirtual
computeEventPriorites() (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModelvirtual
computeRules() (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModelvirtual
convertToAmounts() (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModelvirtual
convertToConcentrations() (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModelvirtual
cresetEvents (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModel
csetBoundaryConditions (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModel
csetCompartmentVolumes (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModel
csetConcentration (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModel
csetInitialConditions (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModel
csetParameterValues (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModel
ctestConstraints (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModel
cupdateDependentSpeciesValues (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModel
evalEventAssignment(int eventId) (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModelvirtual
evalEvents(const double time, const double *y) (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModelvirtual
evalInitialAssignments() (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModelvirtual
evalInitialConditions() (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModelvirtual
evalReactionRates() (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModelvirtual
eventAssignment(int eventId) (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModelvirtual
ExecutableModel()rr::ExecutableModel
ExecutableModelFlags enum namerr::ExecutableModel
getAmount(const int i) (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModel
getAssignmentRuleIds(std::list< std::string > &)=0 (defined in rr::ExecutableModel)rr::ExecutableModelpure virtual
getBoundarySpeciesAmounts(int len, int const *indx, double *values)rr::CompiledExecutableModelvirtual
rr::ExecutableModel::getBoundarySpeciesAmounts(size_t len, int const *indx, double *values)=0rr::ExecutableModelpure virtual
getBoundarySpeciesCompartmentIndex(int index) (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModelvirtual
getBoundarySpeciesConcentrations(int len, int const *indx, double *values)rr::CompiledExecutableModelvirtual
rr::ExecutableModel::getBoundarySpeciesConcentrations(size_t len, int const *indx, double *values)=0rr::ExecutableModelpure virtual
getBoundarySpeciesId(int index) (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModelvirtual
getBoundarySpeciesId(size_t index)=0 (defined in rr::ExecutableModel)rr::ExecutableModelpure virtual
getBoundarySpeciesIndex(const std::string &name) (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModelvirtual
getBoundarySpeciesInitAmounts(size_t len, int const *indx, double *values)=0rr::ExecutableModelpure virtual
getBoundarySpeciesInitConcentrations(size_t len, int const *indx, double *values)=0rr::ExecutableModelpure virtual
getCompartmentId(int index) (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModelvirtual
getCompartmentId(size_t index)=0 (defined in rr::ExecutableModel)rr::ExecutableModelpure virtual
getCompartmentIndex(const std::string &name) (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModelvirtual
getCompartmentIndexForBoundarySpecies(size_t index)=0 (defined in rr::ExecutableModel)rr::ExecutableModelpure virtual
getCompartmentIndexForFloatingSpecies(size_t index)=0 (defined in rr::ExecutableModel)rr::ExecutableModelpure virtual
getCompartmentInitVolumes(int len, int const *indx, double *values) (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModelvirtual
rr::ExecutableModel::getCompartmentInitVolumes(size_t len, int const *indx, double *values)=0rr::ExecutableModelpure virtual
getCompartmentVolumes(int len, int const *indx, double *values)rr::CompiledExecutableModelvirtual
rr::ExecutableModel::getCompartmentVolumes(size_t len, int const *indx, double *values)=0rr::ExecutableModelpure virtual
getConservedMoietyId(int index) (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModelvirtual
getConservedMoietyId(size_t index)=0 (defined in rr::ExecutableModel)rr::ExecutableModelpure virtual
getConservedMoietyIndex(const std::string &name) (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModelvirtual
getConservedMoietyValues(int len, int const *indx, double *values) (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModelvirtual
getConservedMoietyValues(size_t len, int const *indx, double *values)=0 (defined in rr::ExecutableModel)rr::ExecutableModelpure virtual
getConservedSumChanged() (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModelvirtual
getEventDelays(int len, int const *indx, double *values) (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModelvirtual
getEventId(int) (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModelvirtual
getEventId(size_t index)=0 (defined in rr::ExecutableModel)rr::ExecutableModelpure virtual
getEventIds(std::list< std::string > &)=0 (defined in rr::ExecutableModel)rr::ExecutableModelpure virtual
getEventIndex(const std::string &)rr::CompiledExecutableModelvirtual
getEventListener(int) (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModelvirtual
getEventListener(size_t index)=0 (defined in rr::ExecutableModel)rr::ExecutableModelpure virtual
getEventPriorities(int len, int const *indx, double *values) (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModelvirtual
getEventRoots(double time, const double *y, double *gdot)rr::CompiledExecutableModelvirtual
getEventTriggers(int len, const int *indx, unsigned char *values) (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModelvirtual
rr::ExecutableModel::getEventTriggers(size_t len, const int *indx, unsigned char *values)=0rr::ExecutableModelpure virtual
getExecutableModelDesc() constrr::CompiledExecutableModelinlinevirtual
getFlags() constrr::CompiledExecutableModelinlinevirtual
getFloatingSpeciesAmountRate(int index, const double *reactionRates) (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModelvirtual
rr::ExecutableModel::getFloatingSpeciesAmountRate(size_t index, const double *reactionRates)=0rr::ExecutableModelpure virtual
getFloatingSpeciesAmountRates(int len, int const *indx, double *values) (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModelvirtual
rr::ExecutableModel::getFloatingSpeciesAmountRates(size_t len, int const *indx, double *values)=0rr::ExecutableModelpure virtual
getFloatingSpeciesAmounts(int len, int const *indx, double *values)rr::CompiledExecutableModelvirtual
rr::ExecutableModel::getFloatingSpeciesAmounts(size_t len, int const *indx, double *values)=0rr::ExecutableModelpure virtual
getFloatingSpeciesConcentration(int index) (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModel
getFloatingSpeciesConcentrationRates(int len, int const *indx, double *values) (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModelvirtual
rr::ExecutableModel::getFloatingSpeciesConcentrationRates(size_t len, int const *indx, double *values)=0rr::ExecutableModelpure virtual
getFloatingSpeciesConcentrations(int len, int const *indx, double *values)rr::CompiledExecutableModelvirtual
rr::ExecutableModel::getFloatingSpeciesConcentrations(size_t len, int const *indx, double *values)=0rr::ExecutableModelpure virtual
getFloatingSpeciesId(int index) (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModelvirtual
getFloatingSpeciesId(size_t index)=0 (defined in rr::ExecutableModel)rr::ExecutableModelpure virtual
getFloatingSpeciesIndex(const std::string &name) (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModelvirtual
getFloatingSpeciesInitAmounts(int len, int const *indx, double *values) (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModelvirtual
rr::ExecutableModel::getFloatingSpeciesInitAmounts(size_t len, int const *indx, double *values)=0rr::ExecutableModelpure virtual
getFloatingSpeciesInitConcentrations(int len, int const *indx, double *values) (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModelvirtual
rr::ExecutableModel::getFloatingSpeciesInitConcentrations(size_t len, int const *indx, double *values)=0rr::ExecutableModelpure virtual
getGlobalParameterId(int index) (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModelvirtual
rr::ExecutableModel::getGlobalParameterId(size_t index)=0rr::ExecutableModelpure virtual
getGlobalParameterIndex(const std::string &name)rr::CompiledExecutableModelvirtual
getGlobalParameterInitValues(size_t len, int const *indx, double *values)=0rr::ExecutableModelpure virtual
getGlobalParameterValues(int len, int const *indx, double *values)rr::CompiledExecutableModelvirtual
rr::ExecutableModel::getGlobalParameterValues(size_t len, int const *indx, double *values)=0rr::ExecutableModelpure virtual
getIds(int types, std::list< std::string > &ids)rr::CompiledExecutableModelvirtual
getInfo() (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModelvirtual
getInitialAssignmentIds(std::list< std::string > &)=0 (defined in rr::ExecutableModel)rr::ExecutableModelpure virtual
getModelName()rr::CompiledExecutableModelvirtual
getNextPendingEventTime(bool pop) (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModelvirtual
getNumBoundarySpecies()rr::CompiledExecutableModelvirtual
getNumCompartments() (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModelvirtual
getNumConservedMoieties() (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModelvirtual
getNumDepFloatingSpecies()rr::CompiledExecutableModelvirtual
getNumEvents() (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModelvirtual
getNumFloatingSpecies()rr::CompiledExecutableModelvirtual
getNumGlobalParameters()rr::CompiledExecutableModelvirtual
getNumIndFloatingSpecies()rr::CompiledExecutableModelvirtual
getNumLocalParameters(int reactionId) (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModelvirtual
getNumPiecewiseTriggers()=0rr::ExecutableModelpure virtual
getNumRateRules() (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModelvirtual
getNumReactions()rr::CompiledExecutableModelvirtual
getPendingEventSize() (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModelvirtual
getPiecewiseTriggerRoots(double time, const double *y, double *gdot)=0 (defined in rr::ExecutableModel)rr::ExecutableModelpure virtual
getRandom()rr::CompiledExecutableModelvirtual
getRandomSeed()rr::CompiledExecutableModelvirtual
getRateRuleIds(std::list< std::string > &)=0 (defined in rr::ExecutableModel)rr::ExecutableModelpure virtual
getRateRuleRates(size_t len, int const *indx, double *values)rr::ExecutableModelvirtual
getRateRuleSymbols() const =0rr::ExecutableModelpure virtual
getRateRuleValues(double *rateRuleValues)rr::CompiledExecutableModelvirtual
getReactionId(int index)rr::CompiledExecutableModelvirtual
rr::ExecutableModel::getReactionId(size_t index)=0rr::ExecutableModelpure virtual
getReactionIndex(const std::string &reactionName)rr::CompiledExecutableModelvirtual
getReactionRates(int len, const int *indx, double *values) (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModelvirtual
rr::ExecutableModel::getReactionRates(size_t len, int const *indx, double *values)=0rr::ExecutableModelpure virtual
getStateVector(double *stateVector)rr::CompiledExecutableModelvirtual
getStateVectorId(int index) (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModelvirtual
rr::ExecutableModel::getStateVectorId(size_t index)=0rr::ExecutableModelpure virtual
getStateVectorRate(double time, const double *y, double *dydt=0)rr::CompiledExecutableModelvirtual
getStoichiometry(int speciesIndex, int reactionIndex)rr::CompiledExecutableModelvirtual
rr::ExecutableModel::getStoichiometry(int index)=0rr::ExecutableModelpure virtual
getStoichiometryId(size_t index)=0rr::ExecutableModelpure virtual
getStoichiometryIndex(const std::string &)=0rr::ExecutableModelpure virtual
getStoichiometryIndex(const std::string &, const std::string &)=0rr::ExecutableModelpure virtual
getStoichiometryMatrix(int *rows, int *cols, double **data)rr::CompiledExecutableModelvirtual
getSupportedIdTypes()rr::CompiledExecutableModelvirtual
getTime() (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModelvirtual
getValue(const std::string &id)rr::CompiledExecutableModelvirtual
initializeInitialConditions() (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModelvirtual
initializeRateRuleSymbols() (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModelvirtual
initializeRates() (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModelvirtual
INTEGRATION enum valuerr::ExecutableModel
mAssignments (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModel
mAssignmentTimes (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModel
mConservedSumChanged (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModel
mDatarr::CompiledExecutableModel
mDLL (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModel
mDummyDouble (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModel
mDummyDoubleArray (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModel
mDummyInt (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModel
mIntegrationStartTime (defined in rr::ExecutableModel)rr::ExecutableModelprotected
mIsInitializedrr::CompiledExecutableModel
modelStates (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModel
ms (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModel
OPTIMIZE_REACTION_RATE_SELECTION enum valuerr::ExecutableModel
PopDiscard enum valuerr::CompiledExecutableModel
popState(unsigned options=0)rr::CompiledExecutableModelvirtual
print(std::ostream &stream) (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModelvirtual
pushState(unsigned options=0)rr::CompiledExecutableModelvirtual
removePendingAssignmentForIndex(int eventIndex) (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModel
reset()rr::CompiledExecutableModelvirtual
reset(int options)rr::CompiledExecutableModelvirtual
resetEvents() (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModelvirtual
retestEvents(const double &timeEnd, const std::vector< int > &handledEvents, std::vector< int > &removeEvents) (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModel
retestEvents(const double &timeEnd, std::vector< int > &handledEvents, const bool &assignOldState) (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModel
retestEvents(const double &timeEnd, const std::vector< int > &handledEvents, const bool &assignOldState, std::vector< int > &removeEvents) (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModel
saveState(std::ostream &out) (defined in rr::ExecutableModel)rr::ExecutableModelinlinevirtual
setBoundaryConditions() (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModelvirtual
setBoundarySpeciesAmounts(size_t len, int const *indx, double const *values)=0 (defined in rr::ExecutableModel)rr::ExecutableModelpure virtual
setBoundarySpeciesAmounts(size_t len, int const *indx, double const *values, bool strict)=0 (defined in rr::ExecutableModel)rr::ExecutableModelpure virtual
setBoundarySpeciesConcentrations(int len, int const *indx, double const *values)rr::CompiledExecutableModelvirtual
rr::ExecutableModel::setBoundarySpeciesConcentrations(size_t len, int const *indx, double const *values)=0rr::ExecutableModelpure virtual
setBoundarySpeciesInitAmounts(size_t len, int const *indx, double const *values)=0rr::ExecutableModelpure virtual
setBoundarySpeciesInitConcentrations(size_t len, int const *indx, double const *values)=0rr::ExecutableModelpure virtual
setCompartmentInitVolumes(int len, int const *indx, double const *values) (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModelvirtual
rr::ExecutableModel::setCompartmentInitVolumes(size_t len, int const *indx, double const *values)=0rr::ExecutableModelpure virtual
setCompartmentVolumes() (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModelvirtual
setCompartmentVolumes(int len, int const *indx, const double *values) (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModelvirtual
setCompartmentVolumes(size_t len, int const *indx, const double *values)=0 (defined in rr::ExecutableModel)rr::ExecutableModelpure virtual
setCompartmentVolumes(size_t len, int const *indx, const double *values, bool strict)=0 (defined in rr::ExecutableModel)rr::ExecutableModelpure virtual
setConcentration(int index, double value) (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModel
setConservedMoietyValues(int len, int const *indx, const double *values) (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModelvirtual
setConservedMoietyValues(size_t len, int const *indx, const double *values)=0 (defined in rr::ExecutableModel)rr::ExecutableModelpure virtual
setConservedSumChanged(bool) (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModelvirtual
setEventListener(int, rr::EventListenerPtr) (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModelvirtual
setEventListener(size_t index, EventListenerPtr eventHandler)=0 (defined in rr::ExecutableModel)rr::ExecutableModelpure virtual
setFlags(uint32_t)rr::CompiledExecutableModelinlinevirtual
setFloatingSpeciesAmounts(int len, int const *indx, const double *values) (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModelvirtual
setFloatingSpeciesAmounts(size_t len, int const *indx, const double *values)=0 (defined in rr::ExecutableModel)rr::ExecutableModelpure virtual
setFloatingSpeciesAmounts(size_t len, int const *indx, const double *values, bool strict)=0 (defined in rr::ExecutableModel)rr::ExecutableModelpure virtual
setFloatingSpeciesConcentrations(int len, int const *indx, double const *values)rr::CompiledExecutableModelvirtual
rr::ExecutableModel::setFloatingSpeciesConcentrations(size_t len, int const *indx, double const *values)=0rr::ExecutableModelpure virtual
setFloatingSpeciesInitAmounts(int len, int const *indx, double const *values) (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModelvirtual
rr::ExecutableModel::setFloatingSpeciesInitAmounts(size_t len, int const *indx, double const *values)=0rr::ExecutableModelpure virtual
setFloatingSpeciesInitConcentrations(int len, int const *indx, double const *values) (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModelvirtual
rr::ExecutableModel::setFloatingSpeciesInitConcentrations(size_t len, int const *indx, double const *values)=0rr::ExecutableModelpure virtual
setGlobalParameterInitValues(size_t len, int const *indx, double const *values)=0rr::ExecutableModelpure virtual
setGlobalParameterValues(int len, int const *indx, const double *values) (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModelvirtual
setGlobalParameterValues(size_t len, int const *indx, const double *values)=0 (defined in rr::ExecutableModel)rr::ExecutableModelpure virtual
setGlobalParameterValues(size_t len, int const *indx, const double *values, bool strict)=0 (defined in rr::ExecutableModel)rr::ExecutableModelpure virtual
setInitialConditions() (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModelvirtual
setIntegration(bool value)rr::ExecutableModelinlineprotected
setIntegrationStartTime(double time) (defined in rr::ExecutableModel)rr::ExecutableModelvirtual
setParameterValues() (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModelvirtual
setRandomSeed(int64_t)rr::CompiledExecutableModelvirtual
setRateRuleValues(const double *rateRuleValues) (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModelvirtual
setStateVector(const double *stateVector)rr::CompiledExecutableModelvirtual
setStoichiometries(size_t len, int const *indx, const double *values)=0 (defined in rr::ExecutableModel)rr::ExecutableModelpure virtual
setStoichiometries(size_t len, int const *indx, const double *values, bool strict)=0 (defined in rr::ExecutableModel)rr::ExecutableModelpure virtual
setStoichiometry(int index, double value)=0 (defined in rr::ExecutableModel)rr::ExecutableModelpure virtual
setStoichiometry(int speciesIndex, int reactionIndex, double value)=0 (defined in rr::ExecutableModel)rr::ExecutableModelpure virtual
setTime(double _time) (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModelvirtual
setupDLLFunctions()rr::CompiledExecutableModelvirtual
setupModelData()rr::CompiledExecutableModel
setValue(const std::string &id, double value)rr::CompiledExecutableModelvirtual
sortEventsByPriority(std::vector< Event > &firedEvents) (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModel
sortEventsByPriority(std::vector< int > &firedEvents) (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModel
StateStackOptions enum namerr::CompiledExecutableModel
stoichiometryMatrix (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModel
testConstraints() (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModelvirtual
updateDependentSpeciesValues() (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModelvirtual
~CompiledExecutableModel() (defined in rr::CompiledExecutableModel)rr::CompiledExecutableModelvirtual
~ExecutableModel()rr::ExecutableModelinlinevirtual