roadrunner
2.6.0
Fast simulator for SBML models
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This is the complete list of members for rr::NOMSupport, including all inherited members.
addEmptySetNode(const std::string &sbml) (defined in rr::NOMSupport) | rr::NOMSupport | |
addEmptySetNodes(const std::string &sbml) (defined in rr::NOMSupport) | rr::NOMSupport | |
addMissingModifiers(const std::string &sModel) (defined in rr::NOMSupport) | rr::NOMSupport | |
addSourceSinkNodes(const std::string &sbml) (defined in rr::NOMSupport) | rr::NOMSupport | |
changeConstantForRules(Model *model) (defined in rr::NOMSupport) | rr::NOMSupport | |
checkConsistency() (defined in rr::NOMSupport) | rr::NOMSupport | |
convertLevel1ToLevel2Impl(const std::string &sSBML) (defined in rr::NOMSupport) | rr::NOMSupport | |
convertLevel2ToLevel1Impl(const std::string &sSBML) (defined in rr::NOMSupport) | rr::NOMSupport | |
convertMathMLToString(const std::string &sMathML) (defined in rr::NOMSupport) | rr::NOMSupport | static |
convertPowImpl(const std::string &sSBML) (defined in rr::NOMSupport) | rr::NOMSupport | |
convertSBML(const std::string &sModel, const int &nLevel, const int &nVersion) (defined in rr::NOMSupport) | rr::NOMSupport | |
convertSBML(const std::string &sModel, const int &nLevel, const int &nVersion, bool throwError) (defined in rr::NOMSupport) | rr::NOMSupport | |
convertStringToMathML(const std::string &var0) (defined in rr::NOMSupport) | rr::NOMSupport | static |
convertTime(const std::string &sArg, const std::string &sTimeSymbol) | rr::NOMSupport | static |
convertTimeToCSymbol(const std::string &sArg, const std::string &sTimeSymbol) (defined in rr::NOMSupport) | rr::NOMSupport | |
exists(const std::string &sId) (defined in rr::NOMSupport) | rr::NOMSupport | |
fetAnnotatedModel(const std::string &targetSBML, const std::string &sourceSBML, bool checkModelId) (defined in rr::NOMSupport) | rr::NOMSupport | |
fillStack(stack< std::string > &stack, SBMLSymbol &symbol) (defined in rr::NOMSupport) | rr::NOMSupport | static |
fixCommonIssues(const std::string &sbml) (defined in rr::NOMSupport) | rr::NOMSupport | |
fixCommonIssues(const std::string &sbml, const std::string &programName, const std::string &programVersion) (defined in rr::NOMSupport) | rr::NOMSupport | |
getAnnotation(const std::string &sId) (defined in rr::NOMSupport) | rr::NOMSupport | |
getBuiltinFunctionInfo(const std::string &var0) (defined in rr::NOMSupport) | rr::NOMSupport | |
getBuiltinFunctions() (defined in rr::NOMSupport) | rr::NOMSupport | |
getCompartmentIdBySpeciesId(const std::string &sId) (defined in rr::NOMSupport) | rr::NOMSupport | |
getDerivedUnitDefinition(const std::string &sId) (defined in rr::NOMSupport) | rr::NOMSupport | |
getElement(const std::string &sId) (defined in rr::NOMSupport) | rr::NOMSupport | |
getId(SBase &element) (defined in rr::NOMSupport) | rr::NOMSupport | static |
getKineticLaw(const int &index) | rr::NOMSupport | |
getlibSBMLVersion() (defined in rr::NOMSupport) | rr::NOMSupport | static |
getListOfBoundarySpecies() (defined in rr::NOMSupport) | rr::NOMSupport | |
getListOfBoundarySpeciesIds() (defined in rr::NOMSupport) | rr::NOMSupport | |
getListOfErrors() (defined in rr::NOMSupport) | rr::NOMSupport | |
getListOfFloatingSpecies() (defined in rr::NOMSupport) | rr::NOMSupport | |
getListOfFloatingSpeciesIds() (defined in rr::NOMSupport) | rr::NOMSupport | |
getListOfParameters() (defined in rr::NOMSupport) | rr::NOMSupport | |
getMatchForSymbol(const std::string &sbmlId) | rr::NOMSupport | |
getMetaId(const std::string &sId) (defined in rr::NOMSupport) | rr::NOMSupport | |
getModel() (defined in rr::NOMSupport) | rr::NOMSupport | |
getModelId() (defined in rr::NOMSupport) | rr::NOMSupport | |
getModelName() const (defined in rr::NOMSupport) | rr::NOMSupport | |
getNotes(const std::string &sId) (defined in rr::NOMSupport) | rr::NOMSupport | |
getNthBoundarySpeciesCompartmentName(const int &nIndex) (defined in rr::NOMSupport) | rr::NOMSupport | |
getNthBoundarySpeciesId(const int &nIndex) (defined in rr::NOMSupport) | rr::NOMSupport | |
getNthBoundarySpeciesName(const int &nIndex) (defined in rr::NOMSupport) | rr::NOMSupport | |
getNthCompartmentId(const int &nIndex) (defined in rr::NOMSupport) | rr::NOMSupport | |
getNthCompartmentName(const int &nIndex) (defined in rr::NOMSupport) | rr::NOMSupport | |
getNthConstraint(const int &nIndex, std::string &sMessage) (defined in rr::NOMSupport) | rr::NOMSupport | |
getNthError(const int &nIndex) (defined in rr::NOMSupport) | rr::NOMSupport | |
getNthEvent(const int &arg) (defined in rr::NOMSupport) | rr::NOMSupport | |
getNthFloatingSpeciesCompartmentName(int index) | rr::NOMSupport | |
getNthFloatingSpeciesId(const int &nIndex) (defined in rr::NOMSupport) | rr::NOMSupport | |
getNthFloatingSpeciesName(const int &nIndex) (defined in rr::NOMSupport) | rr::NOMSupport | |
getNthFunctionDefinition(const int &arg) (defined in rr::NOMSupport) | rr::NOMSupport | |
getNthGlobalParameterId(const int &nIndex) (defined in rr::NOMSupport) | rr::NOMSupport | |
getNthGlobalParameterName(const int &nIndex) (defined in rr::NOMSupport) | rr::NOMSupport | |
getNthInitialAssignment(const int &nIndex) (defined in rr::NOMSupport) | rr::NOMSupport | |
getNthInitialAssignmentPair(const int &nIndex) (defined in rr::NOMSupport) | rr::NOMSupport | |
getNthListOfModifiers(const int &nIndex) (defined in rr::NOMSupport) | rr::NOMSupport | |
getNthListOfProducts(const int &nIndex) (defined in rr::NOMSupport) | rr::NOMSupport | |
getNthListOfReactants(const int &nIndex) (defined in rr::NOMSupport) | rr::NOMSupport | |
getNthParameterHasValue(const int &nReactionIndex, const int &nParameterIndex) (defined in rr::NOMSupport) | rr::NOMSupport | |
getNthParameterId(const int &nReactionIndex, const int &nParameterIndex) (defined in rr::NOMSupport) | rr::NOMSupport | |
getNthParameterName(const int &nReactionIndex, const int &nParameterIndex) (defined in rr::NOMSupport) | rr::NOMSupport | |
getNthParameterValue(const int &nReactionIndex, const int &nParameterIndex) (defined in rr::NOMSupport) | rr::NOMSupport | |
getNthProductName(const int &nIndex, const int &nProduct) (defined in rr::NOMSupport) | rr::NOMSupport | |
getNthProductStoichiometry(const int &nIndex, const int &nProduct) (defined in rr::NOMSupport) | rr::NOMSupport | |
getNthProductStoichiometryDouble(const int &nIndex, const int &nProduct) (defined in rr::NOMSupport) | rr::NOMSupport | |
getNthReactantName(const int &nIndex, const int &nReactant) (defined in rr::NOMSupport) | rr::NOMSupport | |
getNthReactantStoichiometry(const int &nIndex, const int &nReactant) (defined in rr::NOMSupport) | rr::NOMSupport | |
getNthReactantStoichiometryDouble(const int &nIndex, const int &nReactant) (defined in rr::NOMSupport) | rr::NOMSupport | |
getNthReactionId(const int &nIndex) (defined in rr::NOMSupport) | rr::NOMSupport | |
getNthReactionName(const int &nIndex) (defined in rr::NOMSupport) | rr::NOMSupport | |
getNthRule(const int &nIndex) (defined in rr::NOMSupport) | rr::NOMSupport | |
getNthRuleType(const int &arg) (defined in rr::NOMSupport) | rr::NOMSupport | |
getNthUseValuesFromTriggerTime(const int &arg) (defined in rr::NOMSupport) | rr::NOMSupport | |
getNumBoundarySpecies() (defined in rr::NOMSupport) | rr::NOMSupport | |
getNumCompartments() (defined in rr::NOMSupport) | rr::NOMSupport | |
getNumConstraints() (defined in rr::NOMSupport) | rr::NOMSupport | |
getNumErrors() (defined in rr::NOMSupport) | rr::NOMSupport | |
getNumEvents() (defined in rr::NOMSupport) | rr::NOMSupport | |
getNumFloatingSpecies() (defined in rr::NOMSupport) | rr::NOMSupport | |
getNumFunctionDefinitions() (defined in rr::NOMSupport) | rr::NOMSupport | |
getNumGlobalParameters() (defined in rr::NOMSupport) | rr::NOMSupport | |
getNumInitialAssignments() (defined in rr::NOMSupport) | rr::NOMSupport | |
getNumParameters(int reaction) | rr::NOMSupport | |
getNumProducts(const int &var0) (defined in rr::NOMSupport) | rr::NOMSupport | |
getNumReactants(const int &var0) (defined in rr::NOMSupport) | rr::NOMSupport | |
getNumReactions() | rr::NOMSupport | |
getNumRules() (defined in rr::NOMSupport) | rr::NOMSupport | |
getOutsideCompartment(const std::string &var0) (defined in rr::NOMSupport) | rr::NOMSupport | |
getParamPromotedSBML(const std::string &sArg) (defined in rr::NOMSupport) | rr::NOMSupport | static |
getSBML() (defined in rr::NOMSupport) | rr::NOMSupport | |
getSBMLDocument() (defined in rr::NOMSupport) | rr::NOMSupport | |
getSBOCapableSBML(const std::string &sModel) (defined in rr::NOMSupport) | rr::NOMSupport | |
getSBOTerm(const std::string &sId) (defined in rr::NOMSupport) | rr::NOMSupport | |
getSymbols(const ASTNode *math) | rr::NOMSupport | static |
getValue(const std::string &sId) (defined in rr::NOMSupport) | rr::NOMSupport | |
hasInitialAmount(const std::string &sId) (defined in rr::NOMSupport) | rr::NOMSupport | |
hasInitialConcentration(const std::string &sId) (defined in rr::NOMSupport) | rr::NOMSupport | |
hasSBOTerm(const std::string &sId) (defined in rr::NOMSupport) | rr::NOMSupport | |
hasValue(const std::string &sId) (defined in rr::NOMSupport) | rr::NOMSupport | |
isBoundary(const std::string &sId) | rr::NOMSupport | |
isCompartment(const std::string &sId) | rr::NOMSupport | |
isConstantImpl(const std::string &sId) (defined in rr::NOMSupport) | rr::NOMSupport | |
isFloating(const std::string &sId) (defined in rr::NOMSupport) | rr::NOMSupport | |
isReactionReversible(const int &nIndex) (defined in rr::NOMSupport) | rr::NOMSupport | |
isSpecies(const std::string &sId) (defined in rr::NOMSupport) | rr::NOMSupport | |
loadFromFile(const std::string &fileName) (defined in rr::NOMSupport) | rr::NOMSupport | |
loadParameterPromotedSBML(const std::string &var0, const std::string &sTimeSymbol) (defined in rr::NOMSupport) | rr::NOMSupport | |
loadSBML(const std::string &var0) (defined in rr::NOMSupport) | rr::NOMSupport | |
loadSBML(const std::string &var0, const std::string &sTimeSymbol) (defined in rr::NOMSupport) | rr::NOMSupport | |
multiplyCompartment(const std::string &sbmlId, std::string &compartmentId) (defined in rr::NOMSupport) | rr::NOMSupport | |
needEmptySetNode(Model model) (defined in rr::NOMSupport) | rr::NOMSupport | |
needSinkNode(Model model) (defined in rr::NOMSupport) | rr::NOMSupport | |
needSourceNode(Model model) (defined in rr::NOMSupport) | rr::NOMSupport | |
NOMSupport() (defined in rr::NOMSupport) | rr::NOMSupport | |
removeJD1Layout(const std::string &sSBML) (defined in rr::NOMSupport) | rr::NOMSupport | |
removeJD2Layout(const std::string &sSBML) (defined in rr::NOMSupport) | rr::NOMSupport | |
removeLayoutInformation(const std::string &sSBML) (defined in rr::NOMSupport) | rr::NOMSupport | |
reorderAssignmentRules(deque< Rule * > &assignmentRules) | rr::NOMSupport | static |
reorderRules(SBMLDocument &oc, Model &model) | rr::NOMSupport | static |
replaceSymbol(ASTNode *node, const std::string &oldId, const std::string &newId) (defined in rr::NOMSupport) | rr::NOMSupport | |
setAnnotation(const std::string &sId, const std::string &sAnnotation) (defined in rr::NOMSupport) | rr::NOMSupport | |
setModelId(const std::string &sId) (defined in rr::NOMSupport) | rr::NOMSupport | |
setNotes(const std::string &sId, const std::string &sNotes) (defined in rr::NOMSupport) | rr::NOMSupport | |
setSBOTerm(const std::string &sId, const int &nSBOTerm) (defined in rr::NOMSupport) | rr::NOMSupport | |
setValue(const std::string &sId, const double &dValue) (defined in rr::NOMSupport) | rr::NOMSupport | |
setValue(Model *model, const std::string &id, const double &value, const bool &throwIfNotFound) (defined in rr::NOMSupport) | rr::NOMSupport | |
testASTTime() (defined in rr::NOMSupport) | rr::NOMSupport | |
validateSBML(const std::string &sModel) (defined in rr::NOMSupport) | rr::NOMSupport | |
validateWithConsistency(const std::string &sModel) (defined in rr::NOMSupport) | rr::NOMSupport | |
~NOMSupport() (defined in rr::NOMSupport) | rr::NOMSupport |