roadrunner
2.6.0
Fast simulator for SBML models
- a -
amounts :
rr::SimulateOptions
- b -
boundarySpeciesCompartments :
SModelData
- c -
ColumnHeaders :
RRCData
compartmentName :
rr::Symbol
compartmentVolumesAlias :
rrllvm::LLVMModelData
compiledModuleBinaryStream :
rrllvm::Jit
compiler :
rr::RoadRunnerImpl
concentrations :
rr::SimulateOptions
configurationXML :
rr::RoadRunnerImpl
constraints :
rr::KinsolSteadyStateSolver
copy_result :
rr::SimulateOptions
Count :
RRComplexVector
,
RRList
,
RRStringArray
,
RRVector
CSize :
RRCData
,
RRComplexMatrix
,
RRDoubleMatrix
- d -
Data :
RRCData
,
RRComplexMatrix
,
RRComplexVector
,
RRDoubleMatrix
data :
RRListItem
,
rrllvm::Event
,
rrllvm::LLVMModelData
Data :
RRVector
duration :
rr::SimulateOptions
dValue :
RRListItem
- e -
engine :
rrllvm::Random
- f -
flags :
rr::RoadRunnerOptions
floatingSpeciesAmountRates :
rrllvm::LLVMModelData
,
SModelData
floatingSpeciesAmounts :
SModelData
floatingSpeciesAmountsAlias :
rrllvm::LLVMModelData
floatingSpeciesCompartments :
SModelData
floatingSpeciesConcentrations :
SModelData
floatingSpeciesInitConcentrations :
SModelData
formula :
rr::Symbol
fscale :
rr::KinsolSteadyStateSolver
functionPassManager :
rrllvm::CodeGenBase< FunctionPtrType >
- g -
globalParameterMap :
rr::ForwardSensitivitySolver
- h -
hasOnlySubstance :
rr::Symbol
- i -
imag :
RRComplex
index :
rr::SelectionRecord
initFloatingSpeciesAmountsAlias :
rrllvm::LLVMModelData
integrator :
rr::RoadRunnerImpl
Items :
RRList
ItemType :
RRListItem
iValue :
RRListItem
- j -
jac :
rr::NewtonIteration
jacobianStepSize :
rr::RoadRunnerOptions
- k -
keyName :
rr::Symbol
- l -
linearSolver :
rr::NewtonIteration
loadOpt :
rr::RoadRunnerImpl
localParameters :
SModelData
localParametersNum :
SModelData
localParametersOffsets :
SModelData
lValue :
RRListItem
- m -
mColumnNames :
rr::RoadRunnerData
mData :
rr::CompiledExecutableModel
mDataPrecision :
rr::RoadRunnerData
mDependentSpeciesList :
rr::ModelSymbols
mIndependentSpeciesList :
rr::ModelSymbols
mIsInitialized :
rr::CompiledExecutableModel
mKinsol_Memory :
rr::KinsolSteadyStateSolver
mLibStruct :
rr::CompiledModelGenerator
mLS :
rr::RoadRunnerImpl
mModel :
rr::Solver
mModelName :
rr::ModelSymbols
mName :
rr::RoadRunnerData
mNOM :
rr::CompiledModelGenerator
model :
rrllvm::CodeGenBase< FunctionPtrType >
modelName :
SModelData
moduleBuffer :
rrllvm::Jit
ms :
rr::CompiledModelGenerator
mStateVector :
rr::KinsolSteadyStateSolver
mTheData :
rr::RoadRunnerData
mTimePrecision :
rr::RoadRunnerData
mWeights :
rr::RoadRunnerData
- n -
nodes :
rrllvm::LLVMModelSymbols
Np :
rr::ForwardSensitivitySolver
Ns :
rr::ForwardSensitivitySolver
nSolverIterations :
rr::KinsolSteadyStateSolver
numBoundarySpecies :
SModelData
numCompartments :
SModelData
numDependentSpecies :
SModelData
numFloatingSpecies :
SModelData
numFuncEvals :
rr::KinsolSteadyStateSolver
numGlobalParameters :
SModelData
numIndBoundarySpecies :
rrllvm::LLVMModelData
numIndependentSpecies :
SModelData
numIndFloatingSpecies :
rrllvm::LLVMModelData
numIndGlobalParameters :
rrllvm::LLVMModelData
numModelVariables :
rr::ForwardSensitivitySolver
numRateRules :
rrllvm::LLVMModelData
numReactions :
rrllvm::LLVMModelData
,
SModelData
- o -
options :
rrllvm::CodeGenBase< FunctionPtrType >
output_file :
rr::SimulateOptions
- p -
p :
rr::ForwardSensitivitySolver
p1 :
rr::SelectionRecord
p2 :
rr::SelectionRecord
pbar :
rr::ForwardSensitivitySolver
plist :
rr::ForwardSensitivitySolver
- r -
random :
rrllvm::LLVMModelData
rateRule :
rr::Symbol
rateRuleRates :
rrllvm::LLVMModelData
,
SModelData
rateRuleValues :
SModelData
rateRuleValuesAlias :
rrllvm::LLVMModelData
re :
RRComplex
reactions :
rrllvm::LLVMModelSymbols
reset_model :
rr::SimulateOptions
roadRunnerOptions :
rr::RoadRunnerImpl
RSize :
RRCData
,
RRComplexMatrix
,
RRDoubleMatrix
- s -
selectionType :
rr::SelectionRecord
sensitivity_solver :
rr::RoadRunnerImpl
simulateOpt :
rr::RoadRunnerImpl
size :
rr::LoadSBMLOptions
,
rrllvm::LLVMModelData
srSize :
SModelData
start :
rr::SimulateOptions
stateVector :
rrllvm::LLVMModelData
stateVectorRate :
rrllvm::LLVMModelData
stateVectorSize :
rrllvm::LLVMModelData
steady_state_solver :
rr::RoadRunnerImpl
steps :
rr::SimulateOptions
stoichiometry :
rrllvm::LLVMModelData
String :
RRStringArray
structured_result :
rr::SimulateOptions
sValue :
RRListItem
- t -
time :
rrllvm::LLVMModelData
,
SModelData
- u -
uscale :
rr::KinsolSteadyStateSolver
- v -
value :
rr::Symbol
variables :
rr::SimulateOptions
version :
rr::LoadSBMLOptions
- w -
Weights :
RRCData
whichParameters :
rr::ForwardSensitivitySolver
Generated by
1.9.1