Here is a list of all documented class members with links to the class documentation for each member:
- s -
- saveState()
: rr::RoadRunner
- saveStateS()
: rr::RoadRunner
- SBML_APPLICABLEVALIDATORS
: rr::Config
- SBML_INITIALIZE
: rr::SelectionRecord
- SBMLInitialValueSymbolResolver()
: rrllvm::SBMLInitialValueSymbolResolver
- SelectionRecord()
: rr::SelectionRecord
- SelectionType
: rr::SelectionRecord
- selectionType
: rr::SelectionRecord
- sensitivity_solver
: rr::RoadRunnerImpl
- sensitivitySolverExists()
: rr::RoadRunner
- setBoundary()
: rr::RoadRunner
- setBoundarySpeciesAmounts()
: rr::RoadRunner
, rrllvm::LLVMExecutableModel
- setBoundarySpeciesByIndex()
: rr::RoadRunner
- setBoundarySpeciesConcentrations()
: rr::CompiledExecutableModel
, rr::ExecutableModel
, rr::RoadRunner
, rrllvm::LLVMExecutableModel
- setBoundarySpeciesInitAmounts()
: rr::ExecutableModel
, rrllvm::LLVMExecutableModel
- setBoundarySpeciesInitConcentrations()
: rr::ExecutableModel
, rrllvm::LLVMExecutableModel
- setColNames()
: rr::Matrix3D< IndexType, DataType >
- setColoredOutput()
: rr::Logger
- setCompartmentByIndex()
: rr::RoadRunner
- setCompartmentInitVolumes()
: rr::ExecutableModel
, rrllvm::LLVMExecutableModel
- setCompiler()
: rr::CModelGenerator
, rr::RoadRunner
- setConservedMoietyAnalysis()
: rr::RoadRunner
- setConsoleStream()
: rr::Logger
- setConstant()
: rr::RoadRunner
- setDiffStepSize()
: rr::RoadRunner
- setFlags()
: rr::CompiledExecutableModel
, rr::ExecutableModel
, rrllvm::LLVMExecutableModel
- setFloatingSpeciesByIndex()
: rr::RoadRunner
- setFloatingSpeciesConcentrations()
: rr::CompiledExecutableModel
, rr::ExecutableModel
, rr::RoadRunner
, rrllvm::LLVMExecutableModel
- setFloatingSpeciesInitAmounts()
: rr::ExecutableModel
, rrllvm::LLVMExecutableModel
- setFloatingSpeciesInitConcentrations()
: rr::ExecutableModel
, rrllvm::LLVMExecutableModel
- setFloatingSpeciesInitialConcentrationByIndex()
: rr::RoadRunner
- setFloatingSpeciesInitialConcentrations()
: rr::RoadRunner
- setFluxThreshold()
: rr::RoadRunner
- setFormattingPattern()
: rr::Logger
- setFScale()
: rr::KinsolSteadyStateSolver
- setGlobalParameterByIndex()
: rr::RoadRunner
- setGlobalParameterByName()
: rr::RoadRunner
- setGlobalParameterInitValues()
: rr::ExecutableModel
, rrllvm::LLVMExecutableModel
- setHasOnlySubstanceUnits()
: rr::RoadRunner
- setIndividualTolerance()
: rr::CVODEIntegrator
, rr::Integrator
- setInitAmount()
: rr::RoadRunner
- setInitConcentration()
: rr::RoadRunner
- setIntegration()
: rr::ExecutableModel
- setIntegrator()
: rr::RoadRunner
- setItem()
: rr::BasicDictionary
, rr::Dictionary
, rr::EulerIntegrator
, rr::LoadSBMLOptions
- setLevel()
: rr::Logger
- setListener()
: rr::CVODEIntegrator
, rr::EulerIntegrator
, rr::GillespieIntegrator
, rr::RK45Integrator
, rr::RK4Integrator
- setMaxOrder()
: rr::CVODEIntegrator
- setMaxTries()
: rrllvm::Random
- setModelId()
: rr::RoadRunner
- setModelName()
: rr::RoadRunner
- setNumThreads()
: rr::RoadRunnerMap
- setProperty()
: rr::Logger
- setRandomSeed()
: rr::CompiledExecutableModel
, rr::ExecutableModel
, rrllvm::LLVMExecutableModel
, rrllvm::Random
- setRowNames()
: rr::Matrix3D< IndexType, DataType >
- setSeed()
: rr::RoadRunner
- setSensitivitySolver()
: rr::RoadRunner
- setStateVector()
: rr::CompiledExecutableModel
, rr::ExecutableModel
, rrllvm::LLVMExecutableModel
- setSteadyStateSelections()
: rr::RoadRunner
- setSteadyStateSolver()
: rr::RoadRunner
- setSteadyStateThreshold()
: rr::RoadRunner
- Setting()
: rr::Setting
- settingsPyDictRepr()
: rr::Solver
- setupDLLFunctions()
: rr::CompiledExecutableModel
- setupModelData()
: rr::CompiledExecutableModel
- setUScale()
: rr::KinsolSteadyStateSolver
- setValue()
: rr::CompiledExecutableModel
, rr::Config
, rr::CVODEIntegrator
, rr::ExecutableModel
, rr::GillespieIntegrator
, rr::Integrator
, rr::RoadRunner
, rrllvm::LLVMExecutableModel
- simulate()
: rr::RoadRunner
- simulateOpt
: rr::RoadRunnerImpl
- SimulateOptions()
: rr::SimulateOptions
- SIMULATEOPTIONS_ABSOLUTE
: rr::Config
- SIMULATEOPTIONS_COPY_RESULT
: rr::Config
- SIMULATEOPTIONS_DETERMINISTIC_VARIABLE_STEP
: rr::Config
- SIMULATEOPTIONS_DURATION
: rr::Config
- SIMULATEOPTIONS_INITIAL_TIMESTEP
: rr::Config
- SIMULATEOPTIONS_INTEGRATOR
: rr::Config
- SIMULATEOPTIONS_MAXIMUM_NUM_STEPS
: rr::Config
- SIMULATEOPTIONS_MAXIMUM_TIMESTEP
: rr::Config
- SIMULATEOPTIONS_MINIMUM_TIMESTEP
: rr::Config
- SIMULATEOPTIONS_MULTI_STEP
: rr::Config
- SIMULATEOPTIONS_RELATIVE
: rr::Config
- SIMULATEOPTIONS_STEPS
: rr::Config
- SIMULATEOPTIONS_STIFF
: rr::Config
- SIMULATEOPTIONS_STOCHASTIC_VARIABLE_STEP
: rr::Config
- SIMULATEOPTIONS_STRUCTURED_RESULT
: rr::Config
- size
: rr::LoadSBMLOptions
, rr::RoadRunnerMap
, rr::StringList
, rrllvm::EventQueue
, rrllvm::LLVMModelData
- slice()
: rr::Matrix3D< IndexType, DataType >
- solve()
: rr::BasicNewtonIteration
, rr::LinesearchNewtonIteration
- solveForSteadyState()
: rr::KinsolSteadyStateSolver
- solveNewtonIteration()
: rr::NewtonIteration
- solveNLEQ()
: rr::NLEQSolver
- solveSensitivities()
: rr::ForwardSensitivitySolver
, rr::SteadyStateSensitivitySolver
, rr::TimeSeriesSensitivitySolver
- solveSteadyState()
: rr::SteadyStateSensitivitySolver
- sortColsByLabels()
: rr::Matrix< T >
- sortRowsByLabels()
: rr::Matrix< T >
- srSize
: SModelData
- start
: rr::SimulateOptions
- STATE_VECTOR
: rr::SelectionRecord
- StateStackOptions
: rr::CompiledExecutableModel
- stateVector
: rrllvm::LLVMModelData
- stateVectorRate
: rrllvm::LLVMModelData
- stateVectorSize
: rrllvm::LLVMModelData
- steady_state_solver
: rr::RoadRunnerImpl
- steadyState()
: rr::RoadRunner
- STEADYSTATE_APPROX
: rr::Config
- STEADYSTATE_APPROX_MAX_STEPS
: rr::Config
- STEADYSTATE_APPROX_TIME
: rr::Config
- STEADYSTATE_APPROX_TOL
: rr::Config
- STEADYSTATE_BROYDEN
: rr::Config
- STEADYSTATE_LINEARITY
: rr::Config
- STEADYSTATE_MAXIMUM_NUM_STEPS
: rr::Config
- STEADYSTATE_MINIMUM_DAMPING
: rr::Config
- STEADYSTATE_PRESIMULATION
: rr::Config
- STEADYSTATE_PRESIMULATION_MAX_STEPS
: rr::Config
- STEADYSTATE_PRESIMULATION_TIME
: rr::Config
- STEADYSTATE_RELATIVE
: rr::Config
- steadyStateNamedArray()
: rr::RoadRunner
- steadyStateSolverExists()
: rr::RoadRunner
- steps
: rr::SimulateOptions
- STOICHIOMETRY
: rr::SelectionRecord
- stoichiometry
: rrllvm::LLVMModelData
- stream()
: rr::LoggingBuffer
- String
: RRStringArray
- stringToLevel()
: rr::Logger
- structured_result
: rr::SimulateOptions
- sValue
: RRListItem
- SVD()
: rr::SVD
- SymbolForest
: rrllvm::SymbolForest::ConstIterator
- SymbolIndexType
: rrllvm::LLVMModelDataSymbols
- syncWithModel()
: rr::CVODEIntegrator
, rr::ForwardSensitivitySolver
, rr::GillespieIntegrator
, rr::Integrator
, rr::KinsolSteadyStateSolver
, rr::NLEQSolver
, rr::RK45Integrator
, rr::RK4Integrator
, rr::Solver
, rr::SteadyStateSolverDecorator