roadrunner  2.6.0
Fast simulator for SBML models
rr::CModelGenerator Member List

This is the complete list of members for rr::CModelGenerator, including all inherited members.

cleanEquation(ASTNode *ast)rr::CompiledModelGeneratorprotectedstatic
cleanEquation(const std::string &equation) (defined in rr::CompiledModelGenerator)rr::CompiledModelGeneratorprotectedstatic
CModelGenerator(const std::string &tempFolder, const std::string &supportCodeFolder, const std::string &compiler) (defined in rr::CModelGenerator)rr::CModelGenerator
CompiledModelGenerator() (defined in rr::CompiledModelGenerator)rr::CompiledModelGeneratorprotected
createModel(const std::string &sbml, uint options) (defined in rr::CModelGenerator)rr::CModelGeneratorvirtual
expressionContainsSymbol(ASTNode *ast, const std::string &symbol) (defined in rr::CompiledModelGenerator)rr::CompiledModelGeneratorprotected
expressionContainsSymbol(const std::string &expression, const std::string &symbol) (defined in rr::CompiledModelGenerator)rr::CompiledModelGeneratorprotected
getCompiler()rr::CModelGeneratorvirtual
getHeaderCode()rr::CModelGenerator
getInfo()rr::CompiledModelGeneratorprotectedvirtual
getSourceCode() (defined in rr::CModelGenerator)rr::CModelGenerator
getSourceCodeFileName() (defined in rr::CModelGenerator)rr::CModelGenerator
getSpecies(const std::string &id) (defined in rr::CompiledModelGenerator)rr::CompiledModelGeneratorprotected
getTemporaryDirectory()rr::CModelGeneratorvirtual
initializeL0(int &nrRows, int &nrCols) (defined in rr::CompiledModelGenerator)rr::CompiledModelGeneratorprotected
mComputeAndAssignConsevationLaws (defined in rr::CompiledModelGenerator)rr::CompiledModelGeneratorprotected
mFixAmountCompartments (defined in rr::CompiledModelGenerator)rr::CompiledModelGeneratorprotected
mLibStructrr::CompiledModelGeneratorprotected
mNOMrr::CompiledModelGeneratorprotected
msrr::CompiledModelGeneratorprotected
mWarnings (defined in rr::CompiledModelGenerator)rr::CompiledModelGeneratorprotected
numAdditionalRates() (defined in rr::CompiledModelGenerator)rr::CompiledModelGeneratorprotected
readCompartments() (defined in rr::CompiledModelGenerator)rr::CompiledModelGeneratorprotected
readGlobalParameters() (defined in rr::CompiledModelGenerator)rr::CompiledModelGeneratorprotected
readLocalParameters(const int &numReactions, std::vector< int > &localParameterDimensions, int &totalLocalParmeters) (defined in rr::CompiledModelGenerator)rr::CompiledModelGeneratorprotected
reset() (defined in rr::CompiledModelGenerator)rr::CompiledModelGeneratorprotected
setCompiler(const std::string &compiler)rr::CModelGeneratorvirtual
setTemporaryDirectory(const std::string &path) (defined in rr::CModelGenerator)rr::CModelGeneratorvirtual
substituteTerms(const std::string &reactionName, const std::string &inputEquation, bool bFixAmounts) (defined in rr::CompiledModelGenerator)rr::CompiledModelGeneratorprotected
substituteTerms(const int &numReactions, const std::string &reactionName, const std::string &equation) (defined in rr::CompiledModelGenerator)rr::CompiledModelGeneratorprotected
writeComputeAllRatesOfChange(CodeBuilder &sb, const int &numIndependentSpecies, const int &numDependentSpecies, ls::DoubleMatrix &L0)=0 (defined in rr::CompiledModelGenerator)rr::CompiledModelGeneratorprotectedpure virtual
writeDouble(const double &value, const std::string &format="%G") (defined in rr::CompiledModelGenerator)rr::CompiledModelGeneratorprotected
writeUpdateDependentSpecies(CodeBuilder &sb, const int &numIndependentSpecies, const int &numDependentSpecies, ls::DoubleMatrix &L0)=0 (defined in rr::CompiledModelGenerator)rr::CompiledModelGeneratorprotectedpure virtual
~CModelGenerator() (defined in rr::CModelGenerator)rr::CModelGeneratorvirtual
~CompiledModelGenerator() (defined in rr::CompiledModelGenerator)rr::CompiledModelGeneratorprotectedvirtual