roadrunner
2.6.0
Fast simulator for SBML models
- s -
saveState() :
rr::RoadRunner
saveStateS() :
rr::RoadRunner
SBMLInitialValueSymbolResolver() :
rrllvm::SBMLInitialValueSymbolResolver
SelectionRecord() :
rr::SelectionRecord
sensitivitySolverExists() :
rr::RoadRunner
setBoundary() :
rr::RoadRunner
setBoundarySpeciesAmounts() :
rr::RoadRunner
,
rrllvm::LLVMExecutableModel
setBoundarySpeciesByIndex() :
rr::RoadRunner
setBoundarySpeciesConcentrations() :
rr::CompiledExecutableModel
,
rr::ExecutableModel
,
rr::RoadRunner
,
rrllvm::LLVMExecutableModel
setBoundarySpeciesInitAmounts() :
rr::ExecutableModel
,
rrllvm::LLVMExecutableModel
setBoundarySpeciesInitConcentrations() :
rr::ExecutableModel
,
rrllvm::LLVMExecutableModel
setColNames() :
rr::Matrix3D< IndexType, DataType >
setColoredOutput() :
rr::Logger
setCompartmentByIndex() :
rr::RoadRunner
setCompartmentInitVolumes() :
rr::ExecutableModel
,
rrllvm::LLVMExecutableModel
setCompiler() :
rr::CModelGenerator
,
rr::RoadRunner
setConservedMoietyAnalysis() :
rr::RoadRunner
setConsoleStream() :
rr::Logger
setConstant() :
rr::RoadRunner
setDiffStepSize() :
rr::RoadRunner
setFlags() :
rr::CompiledExecutableModel
,
rr::ExecutableModel
,
rrllvm::LLVMExecutableModel
setFloatingSpeciesByIndex() :
rr::RoadRunner
setFloatingSpeciesConcentrations() :
rr::CompiledExecutableModel
,
rr::ExecutableModel
,
rr::RoadRunner
,
rrllvm::LLVMExecutableModel
setFloatingSpeciesInitAmounts() :
rr::ExecutableModel
,
rrllvm::LLVMExecutableModel
setFloatingSpeciesInitConcentrations() :
rr::ExecutableModel
,
rrllvm::LLVMExecutableModel
setFloatingSpeciesInitialConcentrationByIndex() :
rr::RoadRunner
setFloatingSpeciesInitialConcentrations() :
rr::RoadRunner
setFluxThreshold() :
rr::RoadRunner
setFormattingPattern() :
rr::Logger
setFScale() :
rr::KinsolSteadyStateSolver
setGlobalParameterByIndex() :
rr::RoadRunner
setGlobalParameterByName() :
rr::RoadRunner
setGlobalParameterInitValues() :
rr::ExecutableModel
,
rrllvm::LLVMExecutableModel
setHasOnlySubstanceUnits() :
rr::RoadRunner
setIndividualTolerance() :
rr::CVODEIntegrator
,
rr::Integrator
setInitAmount() :
rr::RoadRunner
setInitConcentration() :
rr::RoadRunner
setIntegration() :
rr::ExecutableModel
setIntegrator() :
rr::RoadRunner
setItem() :
rr::BasicDictionary
,
rr::Dictionary
,
rr::EulerIntegrator
,
rr::LoadSBMLOptions
setLevel() :
rr::Logger
setListener() :
rr::CVODEIntegrator
,
rr::EulerIntegrator
,
rr::GillespieIntegrator
,
rr::RK45Integrator
,
rr::RK4Integrator
setMaxOrder() :
rr::CVODEIntegrator
setMaxTries() :
rrllvm::Random
setModelId() :
rr::RoadRunner
setModelName() :
rr::RoadRunner
setNumThreads() :
rr::RoadRunnerMap
setProperty() :
rr::Logger
setRandomSeed() :
rr::CompiledExecutableModel
,
rr::ExecutableModel
,
rrllvm::LLVMExecutableModel
,
rrllvm::Random
setRowNames() :
rr::Matrix3D< IndexType, DataType >
setSeed() :
rr::RoadRunner
setSensitivitySolver() :
rr::RoadRunner
setStateVector() :
rr::CompiledExecutableModel
,
rr::ExecutableModel
,
rrllvm::LLVMExecutableModel
setSteadyStateSelections() :
rr::RoadRunner
setSteadyStateSolver() :
rr::RoadRunner
setSteadyStateThreshold() :
rr::RoadRunner
Setting() :
rr::Setting
settingsPyDictRepr() :
rr::Solver
setupDLLFunctions() :
rr::CompiledExecutableModel
setupModelData() :
rr::CompiledExecutableModel
setUScale() :
rr::KinsolSteadyStateSolver
setValue() :
rr::CompiledExecutableModel
,
rr::Config
,
rr::CVODEIntegrator
,
rr::ExecutableModel
,
rr::GillespieIntegrator
,
rr::Integrator
,
rr::RoadRunner
,
rrllvm::LLVMExecutableModel
simulate() :
rr::RoadRunner
SimulateOptions() :
rr::SimulateOptions
size() :
rr::RoadRunnerMap
,
rr::StringList
,
rrllvm::EventQueue
slice() :
rr::Matrix3D< IndexType, DataType >
solve() :
rr::BasicNewtonIteration
,
rr::LinesearchNewtonIteration
solveForSteadyState() :
rr::KinsolSteadyStateSolver
solveNewtonIteration() :
rr::NewtonIteration
solveNLEQ() :
rr::NLEQSolver
solveSensitivities() :
rr::ForwardSensitivitySolver
,
rr::SteadyStateSensitivitySolver
,
rr::TimeSeriesSensitivitySolver
solveSteadyState() :
rr::SteadyStateSensitivitySolver
sortColsByLabels() :
rr::Matrix< T >
sortRowsByLabels() :
rr::Matrix< T >
steadyState() :
rr::RoadRunner
steadyStateNamedArray() :
rr::RoadRunner
steadyStateSolverExists() :
rr::RoadRunner
stream() :
rr::LoggingBuffer
stringToLevel() :
rr::Logger
SVD() :
rr::SVD
syncWithModel() :
rr::CVODEIntegrator
,
rr::ForwardSensitivitySolver
,
rr::GillespieIntegrator
,
rr::Integrator
,
rr::KinsolSteadyStateSolver
,
rr::NLEQSolver
,
rr::RK45Integrator
,
rr::RK4Integrator
,
rr::Solver
,
rr::SteadyStateSolverDecorator
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1.9.1